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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57407.1
DDBJ      :             putative ATP-dependent DNA ligase
Swiss-Prot:             

Homologs  Archaea  58/68 : Bacteria  198/915 : Eukaryota  52/199 : Viruses  1/175   --->[See Alignment]
b.40.4d.142.2
:362 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->213 2cfmA PDBj 3e-17 32.3 %
:RPS:PDB   8->330 1a0iA PDBj 1e-27 16.8 %
:RPS:SCOP  3->201 1x9nA3  d.142.2.1 * 3e-30 24.6 %
:RPS:SCOP  201->330 1a0iA1  b.40.4.6 * 3e-05 14.6 %
:HMM:SCOP  5->199 1a0iA2 d.142.2.1 * 4.8e-53 37.1 %
:HMM:SCOP  201->342 1x9nA2 b.40.4.6 * 3.6e-14 31.9 %
:RPS:PFM   29->193 PF01068 * DNA_ligase_A_M 3e-22 40.5 %
:HMM:PFM   11->199 PF01068 * DNA_ligase_A_M 5.3e-40 35.8 187/202  
:HMM:PFM   217->333 PF04679 * DNA_ligase_A_C 1.4e-18 42.5 87/96  
:BLT:SWISS 3->336 DNLI_THEFM 8e-23 33.4 %
:PROS 29->37|PS00697|DNA_LIGASE_A1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57407.1 GT:GENE BAD57407.1 GT:PRODUCT putative ATP-dependent DNA ligase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2728594..2729682) GB:FROM 2728594 GB:TO 2729682 GB:DIRECTION - GB:PRODUCT putative ATP-dependent DNA ligase GB:PROTEIN_ID BAD57407.1 LENGTH 362 SQ:AASEQ MDLPVMPPVKPMLAKATPSVPREPGLCYEPKWDGFRCVVFRDGPEVELGSRNDRPLTRYFPEVAELLKQALPARCVVDGEIVVVTEHGLDFDVLQNRLHPAASRVNKLAVETPASFVAFDLLALGDEDLTGEPFAERRRRLEQILDTEPARVHLTPLTRDPDVAEDWFTRFEGAGFDGVMVKAADQPYQQDKRVMFKVKHERTADCVVAGFRWHKDGQGVGSLLLGLYDDDGRLHHVGVASSFTAARRAELVDELAPLRENALVDHPWREWADAAAQARSEGKMPGGISRWTGGKDLSWEALRPELVAEVRYEHVQSGRLRHGGRLVRFRTDRTPQSCTYAQLEEVAPAELSEIFTETAASR GT:EXON 1|1-362:0| BL:SWS:NREP 1 BL:SWS:REP 3->336|DNLI_THEFM|8e-23|33.4|296/559| PROS 29->37|PS00697|DNA_LIGASE_A1|PDOC00295| SEG 221->234|gslllglydddgrl| BL:PDB:NREP 1 BL:PDB:REP 8->213|2cfmA|3e-17|32.3|201/545| RP:PDB:NREP 1 RP:PDB:REP 8->330|1a0iA|1e-27|16.8|292/332| RP:PFM:NREP 1 RP:PFM:REP 29->193|PF01068|3e-22|40.5|163/201|DNA_ligase_A_M| HM:PFM:NREP 2 HM:PFM:REP 11->199|PF01068|5.3e-40|35.8|187/202|DNA_ligase_A_M| HM:PFM:REP 217->333|PF04679|1.4e-18|42.5|87/96|DNA_ligase_A_C| GO:PFM:NREP 5 GO:PFM GO:0003910|"GO:DNA ligase (ATP) activity"|PF01068|IPR012310| GO:PFM GO:0005524|"GO:ATP binding"|PF01068|IPR012310| GO:PFM GO:0006260|"GO:DNA replication"|PF01068|IPR012310| GO:PFM GO:0006281|"GO:DNA repair"|PF01068|IPR012310| GO:PFM GO:0006310|"GO:DNA recombination"|PF01068|IPR012310| RP:SCP:NREP 2 RP:SCP:REP 3->201|1x9nA3|3e-30|24.6|199/220|d.142.2.1| RP:SCP:REP 201->330|1a0iA1|3e-05|14.6|96/101|b.40.4.6| HM:SCP:REP 5->199|1a0iA2|4.8e-53|37.1|194/0|d.142.2.1|1/1|DNA ligase/mRNA capping enzyme, catalytic domain| HM:SCP:REP 201->342|1x9nA2|3.6e-14|31.9|119/0|b.40.4.6|1/1|Nucleic acid-binding proteins| OP:NHOMO 537 OP:NHOMOORG 309 OP:PATTERN 111-1111111111-11111-112-1111--11111111-1111-1111122211111111-11111- -25-4---------24433-34--243333314556426412-112-1-1--252-----224-123342----------1--1-1-------------2-1-214-2-1--------------1--------------1-----------------11--11-------------------------11-1-1---------------212212------1----------1---------------------------------------------------------------------------------------------------------1-------1--------111-111111111-----1-12112-----126124121-1------------1-11111111171-155133433557-1-1--1-11-11----------111---1-------------------------------2211--1--1112111-----2112--------1311----1--21----1-2-------1-------------1-1--------------111---1--334211------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1111211-112------------------------3213233111-------------------------------------------------------------2- -----1--------1-------------------------------------------------------------------------------------------1-112-212-2--1-122---3-3E3-31211-12--31-22--2---121-1111-----1-----1-1-118111-1------1--1111- ------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------ STR:NPRED 351 STR:RPRED 97.0 SQ:SECSTR #cccTTcTTccccEEEEEccHHHccEEEEEccccEEEEEEEETTcEEEEcTTccEEcHHHHHHHHcTTcccTTEEEEEEEEEEcccTTTHHHHHHcccccccccccccccTTTEEEEEEEEEEHHHHHHcccEEEEHHHHHHHHHHTcEEEEccEEEEccHHHHHHHHHHHHTTTcccEEEEcTTcEEccEEEEEEEEcccEEEEEEEEEEEcccTTTcccccccEEEEEcTTccEEEEcccccHHHHHHHHHHHHHHTTcccccHHHHHHHHcccHHGGGEEEEETTEETccccccccccTTTTcEEEEEEcEETTccEEcTcEEEEEcTTccGGGcccHHHHHHHHHHHH########## DISOP:02AL 94-104, 348-362| PSIPRED ccccccccccHHHHHHHccccccccEEEEEEEccEEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccHHHHHHHHHcccccHHHHHHHccEEEEEEEEEEccccccccccHHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHHHccccEEEEEcccccccccccccEEEEEEccccEEEEEEEEccccccccEEEEEEEEcccEEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEEEEccccccEEEccEEEEEEccccHHHccHHHHHHHHccHHHHccccccccc //