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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57411.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  39/68 : Bacteria  733/915 : Eukaryota  167/199 : Viruses  0/175   --->[See Alignment]
c.46.1c.79.1
:441 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->267 3dwgA PDBj 2e-20 35.8 %
:RPS:PDB   6->310 2bhtC PDBj 4e-26 26.1 %
:RPS:PDB   339->439 3d1pA PDBj 6e-08 16.8 %
:RPS:SCOP  3->310 1d6sA  c.79.1.1 * 1e-43 25.3 %
:RPS:SCOP  339->441 1yt8A1  c.46.1.2 * 5e-09 17.5 %
:HMM:SCOP  1->317 1wkvA1 c.79.1.1 * 2.1e-51 31.0 %
:HMM:SCOP  334->441 1yt8A3 c.46.1.2 * 2.5e-29 41.9 %
:RPS:PFM   9->273 PF00291 * PALP 5e-13 32.3 %
:HMM:PFM   6->299 PF00291 * PALP 1.9e-44 29.8 275/297  
:HMM:PFM   341->433 PF00581 * Rhodanese 7.6e-15 29.0 93/113  
:BLT:SWISS 1->310 CYSM_PSEAE 7e-23 30.1 %
:PROS 365->376|PS00380|RHODANESE_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57411.1 GT:GENE BAD57411.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2732791..2734116) GB:FROM 2732791 GB:TO 2734116 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD57411.1 LENGTH 441 SQ:AASEQ MRYDHITDLVGNTPLLRLDPAVHGLDGVELFAKLESHNPFGSVKDRVAVALLRDELDRVRADGQTLIEASSGNTAKALRVLGAMSGVGLRAVTNRIKVGEVRDLLRLLGTEIVELPGLSECPDPGAPNDVAAVIAATMAQAPGAYHHPSQYTNEKNIEAHWHGTGREIHRDLAARGIDRVDYLVGGLGTTGSTRGTATHLRTHHPGLRTIGVVSTRADFIPGIRSETEMWDVGLFRPEFYDRILAVDSGTAIEATLHLATGYGVLAGPTSGASYAAALRTLRDLDRSRRPPDGPVVAVVIVCDRLEPYLSYIKKRRPDLFGGADPDAAPTPAELAAVPRLTPAELADRDRTERLTVVDTRGAMAYRIGHVPGAINLRDDLLDDMLTHGVPFPRGRPVVFVCPVGEVALRFAVRARRAGYDAASLDGGVVAWRDAGLPWERG GT:EXON 1|1-441:0| BL:SWS:NREP 1 BL:SWS:REP 1->310|CYSM_PSEAE|7e-23|30.1|286/299| PROS 365->376|PS00380|RHODANESE_1|PDOC00322| SEG 131->141|aaviaatmaqa| SEG 185->198|gglgttgstrgtat| SEG 275->294|aaalrtlrdldrsrrppdgp| SEG 323->338|adpdaaptpaelaavp| SEG 388->404|gvpfprgrpvvfvcpvg| SEG 406->417|valrfavrarra| BL:PDB:NREP 1 BL:PDB:REP 2->267|3dwgA|2e-20|35.8|254/325| RP:PDB:NREP 2 RP:PDB:REP 6->310|2bhtC|4e-26|26.1|284/291| RP:PDB:REP 339->439|3d1pA|6e-08|16.8|101/118| RP:PFM:NREP 1 RP:PFM:REP 9->273|PF00291|5e-13|32.3|251/293|PALP| HM:PFM:NREP 2 HM:PFM:REP 6->299|PF00291|1.9e-44|29.8|275/297|PALP| HM:PFM:REP 341->433|PF00581|7.6e-15|29.0|93/113|Rhodanese| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF00291|IPR001926| GO:PFM GO:0008152|"GO:metabolic process"|PF00291|IPR001926| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00291|IPR001926| RP:SCP:NREP 2 RP:SCP:REP 3->310|1d6sA|1e-43|25.3|288/323|c.79.1.1| RP:SCP:REP 339->441|1yt8A1|5e-09|17.5|103/136|c.46.1.2| HM:SCP:REP 1->317|1wkvA1|2.1e-51|31.0|297/0|c.79.1.1|1/1|Tryptophan synthase beta subunit-like PLP-dependent enzymes| HM:SCP:REP 334->441|1yt8A3|2.5e-29|41.9|105/0|c.46.1.2|1/1|Rhodanese/Cell cycle control phosphatase| OP:NHOMO 1816 OP:NHOMOORG 939 OP:PATTERN 22111-11111111111----1--1121111111--------132-11-111---1-----2-1---1 4222211111121122233-32223233232322223234133211111221323122--423132222221----11-1-11111112221-1-----32423321123---------------1111121221122222111313224114222422222212225532222122222122-11111111333333333333333333233333333331322111111352222222222222212222221-21122-2-112212-2---12221111111111111111111111111111111111111222111123213222222222111221222212--1222121322212123221-2131-1222-----212222221432312222222121122122322142-4112223222222222321122222121111111121122222-----------------------------11222111111222121211111112111111212333212113222222232211111122321111111-2-22332211221132111-232232342555428322111111-11--2-------1----112211221221111222--21112-12221----1211------33111332222222222-2222222222222222222343224432222222222222222122222222-111111111111---311111111122232---------------222222211122433312342212225221--------1---111111--1--111111111122221121332222-------------------------------------11-1111-1-22 ----231-211-11321122222232222211222124243342122234224222222222222333122123311-1121112221-3211111-1--221321-462212242111--11133--15C1-212-1--1-11---1--2--2-111-132211212221362-1342f3325448CC2C-2355554 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 421 STR:RPRED 95.5 SQ:SECSTR cccccTGGGcccccEEEccccccccTccEEEEEETTccTTccTHHHHHHHHHHHHHHTcccTTcEEEEEcccHHHHHHHHHHHHHTcEEEEEEETTccHHHHHHHHHTTcEEEEEcTTTEcTTTTHHHHHHHHHHHHHHTTccEEccccTTTcTTTHHHHHHTHHHHHHHTTTcccTccccEEEEEccccHHHHHHHHHHTTcccccEEEEEEEcTTcccTTcccccGGGccTTccGGGccEEEEEcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHTTTTTccccTcEEcTTcEEEEEEcccGGGGGGccTTccTT####################EccHHHHHHHHHTTTEEEEEcccHHHHHHcccTTcEEccTTTcTTGGGccccccTTcEEEEEccccHHHHHHHHHHHTTTcccEEEcTTHHHHHHTTGGGcEc DISOP:02AL 440-441| PSIPRED cccccHHHHHccccEEEcccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHccEEEEEcccccccccHHHHHHHHHHHHHHHHccccEEEEccccccccHHHHcccHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHccccEEEEEEccccccccccccccEEcccccccHHHcccEEEEcHHHHHHHHHHHHHHccEEEEcHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccEEcccccHHHHHHHcccccccccHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHcccEEEEEEccHHHHHHcccccccc //