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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57412.1
DDBJ      :             putative decarboxylase
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  40/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
b.49.2c.1.6
:469 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   33->235 2p3eB PDBj 9e-10 31.2 %
:RPS:PDB   33->462 1d7kB PDBj 4e-29 18.7 %
:RPS:SCOP  47->247 1knwA2  c.1.6.1 * 3e-22 18.8 %
:RPS:SCOP  324->437 1hkvA1  b.49.2.3 * 9e-13 26.1 %
:HMM:SCOP  33->338 1twiA2 c.1.6.1 * 6.2e-37 33.6 %
:HMM:SCOP  280->466 1hkvA1 b.49.2.3 * 6e-50 51.2 %
:RPS:PFM   50->244 PF02784 * Orn_Arg_deC_N 9e-14 38.0 %
:HMM:PFM   61->251 PF02784 * Orn_Arg_deC_N 2.2e-24 31.4 185/251  
:HMM:PFM   357->440 PF00278 * Orn_DAP_Arg_deC 1.3e-09 23.5 81/116  
:BLT:SWISS 33->458 Y4YA_RHISN 9e-35 32.0 %
:PROS 66->84|PS00878|ODR_DC_2_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57412.1 GT:GENE BAD57412.1 GT:PRODUCT putative decarboxylase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2734116..2735525) GB:FROM 2734116 GB:TO 2735525 GB:DIRECTION - GB:PRODUCT putative decarboxylase GB:PROTEIN_ID BAD57412.1 LENGTH 469 SQ:AASEQ MSGEPPALPARLHPLVRAFLDDRAAVAAVADGGTPAHVVFPQVLAENVGALAAVLDRSPVRSRMCYAHKVNRSPALARAAERCGIGIDVASPGELANARAAGFGPARIEVTGPKGARFLATAVASGATINVDNLWELAALDDLARGTDPIPTLLRVGDLPGTPRSRFGVPLPRVDDALRLLAASAARIRFLGFAFHLDSGAVTDRVRAVQTCLALIERAHAHGLAPHVLDIGGGLRQVFTADADRFDGYVRALRAGLAGRGPAMSWPGQTFGYHVAGGAAHGTPVFHKYGNTVGAADMLAELLAAPLAEHEGRPLGTVLADNLLELWLEPGKALVDHAGLTLASVEFVKELGDGTVLVTLDLSRDTVTPADQEVMVDPLVLPGARRDDGPAVGVYFAGRLCLERDLITTRQVFLPGLPAPGDVVVFPNTAAYHMDLSASTAARWAPPRRWVVESTAAGFAARPDTEAAA GT:EXON 1|1-469:0| BL:SWS:NREP 1 BL:SWS:REP 33->458|Y4YA_RHISN|9e-35|32.0|397/457| PROS 66->84|PS00878|ODR_DC_2_1|PDOC00685| SEG 16->31|vraflddraavaavad| SEG 177->189|alrllaasaarir| SEG 251->261|ralraglagrg| SEG 295->308|aadmlaellaapla| BL:PDB:NREP 1 BL:PDB:REP 33->235|2p3eB|9e-10|31.2|192/403| RP:PDB:NREP 1 RP:PDB:REP 33->462|1d7kB|4e-29|18.7|364/406| RP:PFM:NREP 1 RP:PFM:REP 50->244|PF02784|9e-14|38.0|192/249|Orn_Arg_deC_N| HM:PFM:NREP 2 HM:PFM:REP 61->251|PF02784|2.2e-24|31.4|185/251|Orn_Arg_deC_N| HM:PFM:REP 357->440|PF00278|1.3e-09|23.5|81/116|Orn_DAP_Arg_deC| GO:PFM:NREP 1 GO:PFM GO:0003824|"GO:catalytic activity"|PF02784|IPR000183| RP:SCP:NREP 2 RP:SCP:REP 47->247|1knwA2|3e-22|18.8|197/247|c.1.6.1| RP:SCP:REP 324->437|1hkvA1|9e-13|26.1|111/181|b.49.2.3| HM:SCP:REP 33->338|1twiA2|6.2e-37|33.6|247/0|c.1.6.1|1/1|PLP-binding barrel| HM:SCP:REP 280->466|1hkvA1|6e-50|51.2|170/182|b.49.2.3|1/1|Alanine racemase C-terminal domain-like| OP:NHOMO 50 OP:NHOMOORG 46 OP:PATTERN ---------------------------------11--------1--11-------------------- -----1-11111------------------------2-----------1------------------2----------------------------------------------------------------------------------------------1----11-----------------------1---------------------1---111-------------------------------------1--------------1--------------------------------------------------1-------------------------------------------1------2---------1---1--------------------------------------2------1--------------------------------------------------------------------1-------------------------1----------------1--------------------------------------------------------------------------------11------1--------------------------11------------------------------------------------11--1----------------------------------------11-----------1----------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 425 STR:RPRED 90.6 SQ:SECSTR ################################cccEEEEEHHHHHHHHHHHHHHcTTcEEEHEEEEEEGGcccHHHHHHHHTTTcEEEEccHHHHHHHHTTTccGGGEEEcccccHHHHHHHHHTTccEEEccHHHHHHHHHHcTTcEEEEcccccccccccccccccccHHHHHHHHHHHHHHTccEEEEEcccccccccTHHHHHHHHHHHHHHHHHHTTTccccEEEcccccHcccTTccccccGGTccccTTTccGGcccccccccHHHHHHHHHHHHHHHccGGGccc##########cccGGcccHHHHHHHTGGGccEEEEcccHHHHTTTEEEEEEEEEEEEEcccccccEcccTTTGGGHHHHcccccccEEcccccTTccEEEEEEEcccccTTcEEEEEEEEEEccccTTcEEEEcccccccGGGGcccGGGccccEEEEEEcHHHHHHHHHHccc## DISOP:02AL 1-2, 468-469| PSIPRED cccccccccccccHHHHHHHccccHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHccccEEEEcHHHHHHHHHccccccEEEEcccccHHHHHHHHHcccEEEEccHHHHHHHHHHHHHcccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHccHHHcccHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccEEEEEcccEEEEcccEEEEEEEEEEEcccccEEEEEEcccHHHHHHHHHHHcccEEEEcccccccccEEEEEEccccccccEEEEcccccccccccccEEEEEcccHHHHHHHHHHcccccccEEEEEEcccEEEEEEccccccc //