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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57421.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  23/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:159 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   1->159 3b6cB PDBj 2e-05 10.7 %
:HMM:SCOP  1->66 1t33A1 a.4.1.9 * 1.3e-08 35.4 %
:HMM:PFM   2->40 PF00440 * TetR_N 9e-15 41.0 39/47  
:HMM:PFM   45->65 PF10746 * Phage_holin_6 0.00044 33.3 21/66  
:BLT:SWISS 30->158 Y790_MYCBO 8e-25 45.0 %
:PROS 6->37|PS01081|HTH_TETR_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57421.1 GT:GENE BAD57421.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2743798..2744277) GB:FROM 2743798 GB:TO 2744277 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57421.1 LENGTH 159 SQ:AASEQ MLAREGYAGMTIRMVAAAAGVGAATAYTYFSSKEHLVAEIFWRRLRAAPVPATAGSDRTARVIAELRTIALLVADEPELSGAVTGALLGRDPDVQHLRTRIGVEIRGRISAALAPDPDPEIIESLELIYAGALMRAGMGHESYADIADRIVRSAMLVLR GT:EXON 1|1-159:0| BL:SWS:NREP 1 BL:SWS:REP 30->158|Y790_MYCBO|8e-25|45.0|129/213| PROS 6->37|PS01081|HTH_TETR_1|PDOC00830| SEG 15->29|vaaaagvgaatayty| RP:PDB:NREP 1 RP:PDB:REP 1->159|3b6cB|2e-05|10.7|159/203| HM:PFM:NREP 2 HM:PFM:REP 2->40|PF00440|9e-15|41.0|39/47|TetR_N| HM:PFM:REP 45->65|PF10746|0.00044|33.3|21/66|Phage_holin_6| HM:SCP:REP 1->66|1t33A1|1.3e-08|35.4|65/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 36 OP:NHOMOORG 23 OP:PATTERN -------------------------------------------------------------------- --------------12211-11--2211111232322211----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 159 STR:RPRED 100.0 SQ:SECSTR HHHHHcGGGccHHHHHHHHTccHHHHHHHHccHHHHHHHHHHHHGGGcccccccTTcHHHHHHHHHHHHHHHHHHcTTHHHHHTTcccccHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHTccTTTcHHHHH DISOP:02AL 159-160| PSIPRED cHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcc //