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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57429.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  28/68 : Bacteria  692/915 : Eukaryota  144/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:264 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   50->252 2japC PDBj 3e-16 29.4 %
:RPS:PDB   34->220 1dohB PDBj 7e-24 17.2 %
:RPS:SCOP  34->238 1pwxA  c.2.1.2 * 4e-25 20.1 %
:HMM:SCOP  6->238 1zemA1 c.2.1.2 * 2.3e-56 36.1 %
:RPS:PFM   37->176 PF00106 * adh_short 8e-17 37.1 %
:HMM:PFM   13->177 PF00106 * adh_short 3.4e-29 28.0 161/167  
:BLT:SWISS 39->196 DHK1_STRVN 1e-15 32.9 %
:PROS 146->174|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57429.1 GT:GENE BAD57429.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2750996..2751790 GB:FROM 2750996 GB:TO 2751790 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57429.1 LENGTH 264 SQ:AASEQ MPRFDPHPARRPVLIAGASSGIGAATAVALAALGHPVALGARRVELCEEIAGKIRADGGTALAHRLDVTDDASVDAFVTAAEAAHGSTEMLVSGAGDIEFGPVGEMAPDQFVKQVQVHLVGAHRMVHRVLPGMTARRRGDIVLISSDCADHPRPHTGAYSAAKAGVEAMAVQLRMELEGTGIRASLVRPGPTQTGMGMTSAPEVVGPMLEAWQEWGFARHPYFLRASQLADAVVAVVSAPRGAHLVLVEVQPEAPLKPRPEADS GT:EXON 1|1-264:0| BL:SWS:NREP 1 BL:SWS:REP 39->196|DHK1_STRVN|1e-15|32.9|158/272| PROS 146->174|PS00061|ADH_SHORT|PDOC00060| SEG 15->33|iagassgigaatavalaal| BL:PDB:NREP 1 BL:PDB:REP 50->252|2japC|3e-16|29.4|197/246| RP:PDB:NREP 1 RP:PDB:REP 34->220|1dohB|7e-24|17.2|186/271| RP:PFM:NREP 1 RP:PFM:REP 37->176|PF00106|8e-17|37.1|140/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 13->177|PF00106|3.4e-29|28.0|161/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 34->238|1pwxA|4e-25|20.1|199/252|c.2.1.2| HM:SCP:REP 6->238|1zemA1|2.3e-56|36.1|233/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 3949 OP:NHOMOORG 864 OP:PATTERN -----11-1111111--1---1--54433324-1----------1-1----1---1------1-2-32 59A2G212335342OTHDC-DM44IbDDDDDGMVWVGUXS1F7XB6433751357314119682F5BBH83----111-2-1C-----3333-111---126244I4853---------------22114321121566771115376883323411-1-222-12496D1--11-----1--73421---62622222322323233252554722335213223333312B2221111-1122211322324-212212---6711335-3-214442121333111222222222221111122222212222---222-1-123-------1-11-111---3----231--111112-1-1111--116-4J779-111192MDD112679B844444444449-76975F7DAPG1KDDBGCGLQLPMEI3A198756575583333333355832592-----------------------------14FO6257538NEEDJE6A999AAHGABB958PCM9LI7-289B9133575G8F6234-32344-------112831162311121-1114-232141-235844GE1---1------------------1--1114323466231--1112-122---1121-11--2-223------35892724553444444-5444444545544554555786943314333343333333334655444441-333333333333---1111112111246742224-3------11-443351243293884678889458786252111111111222333333332334A859543332-1--12111--11----------1----1---2--------2---------1-------18- ----422-21---1-43216457555822131123--212233122417855B7441-2212--2211111-1121----2--2-1-1-44431211-11-22111-24-746456--------21-11372-313-22-2-11--1---2--1-1-35124171-131432225122---1-2234381431253445 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 227 STR:RPRED 86.0 SQ:SECSTR #################################TcEEEEEEcccHHHHHHHHHHHHHTTccEEEEccTTcHHHHHHHHHHHHHHHccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHccTTcEEEEEEccGGGTcccccccHHHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEEcccccHHHHHHGGGGcTTcTTccHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHTTccccGGGcccTT#### DISOP:02AL 1-6, 257-264| PSIPRED cccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccEEEEEEcccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccEEEEEcccccccccccc //