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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57438.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  29/68 : Bacteria  707/915 : Eukaryota  177/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:298 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   86->251 2cfcA PDBj 1e-19 39.2 %
:RPS:PDB   1->23 2c5eA PDBj 7e-04 13.0 %
:RPS:PDB   82->194 3ce6B PDBj 3e-20 9.0 %
:RPS:SCOP  82->252 1pwxA  c.2.1.2 * 5e-26 20.6 %
:HMM:SCOP  6->276 1xhlA_ c.2.1.2 * 1.4e-53 34.4 %
:RPS:PFM   86->179 PF00106 * adh_short 7e-09 39.1 %
:HMM:PFM   12->180 PF00106 * adh_short 2.5e-23 26.9 160/167  
:BLT:SWISS 86->251 HCDR_XANP2 3e-19 39.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57438.1 GT:GENE BAD57438.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2760693..2761589 GB:FROM 2760693 GB:TO 2761589 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57438.1 LENGTH 298 SQ:AASEQ MSGHGSMRGRGAVVVGATSGIGRAVAEALAAEGAGVVVNGRDSAAVDAAVAHLGARARQGGRVVGVPGSAAHEAVAQQAVATCRAEFGAVDVLVNCAGVPEPDGSSILNVTEPQWHALLEAHLGTAFATCRAVAPHMVAQGRGSIVTTGSFAYLGDYGRTGYAAGKGAVTSLTLAVAAELKEHGVRANVVCPGAKTRLSSGPGYEAKIRELHRRGLLDEVSAHGALDAPPAEYAARLYLFLAGDRAADVTGQVFVAAGGFVGRFERPTPAVLGYRDHHTDPPWELGDLEHLIGRRARR GT:EXON 1|1-298:0| BL:SWS:NREP 1 BL:SWS:REP 86->251|HCDR_XANP2|3e-19|39.2|158/250| SEG 24->38|avaealaaegagvvv| SEG 40->68|grdsaavdaavahlgararqggrvvgvpg| SEG 70->81|aaheavaqqava| SEG 253->262|vfvaaggfvg| BL:PDB:NREP 1 BL:PDB:REP 86->251|2cfcA|1e-19|39.2|158/250| RP:PDB:NREP 2 RP:PDB:REP 1->23|2c5eA|7e-04|13.0|23/362| RP:PDB:REP 82->194|3ce6B|3e-20|9.0|111/485| RP:PFM:NREP 1 RP:PFM:REP 86->179|PF00106|7e-09|39.1|92/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 12->180|PF00106|2.5e-23|26.9|160/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 82->252|1pwxA|5e-26|20.6|170/252|c.2.1.2| HM:SCP:REP 6->276|1xhlA_|1.4e-53|34.4|270/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 4081 OP:NHOMOORG 913 OP:PATTERN --1---1222222111-1-----11--1112311----------111---21-----------13--1 4562D--2223---DSI88-8K--BQ88888AIQTREHZW2E1Z454--43-6351-1--36I-849GAD4--------152H-----221111111--112115638121111111-1-111122312311121288867--12421531112211---1--11133342--11-----1--73255121736444444555464444A7666644347679721111115C222222122222221333323-2----1---1111-----------111123211-111111111112211222222221-22---2221214433331333-3-4144113313-1-331-11211321423222231-5-3A5591----41QED333C9B896697578698B-44744I58BH81FDD5A9FDBLIJFJ36384ED4CC438--------78731344--------------11-------------44MM418NJDEJJJPMF9B9A8FFLGCCBB3FVDNCURE34888B4666B8C4IH3361-11431111111---D6518251-1----111-35217221223113A21-------------------------115341335233124333127433422624211-1-23311-11154333245444555555-4454545565445545544878223254334444434334343933333343-3666666666661-112222254452239611131311111112111211-311-A2BC7C485A73356B567---------1122722222-1-11337566644411111111111122----------1-------------------------1221111121141 ----212-1-1-2225742122374761212222222424444121234467C8231211-1111111111111111111111121-1-24273322121222431-23-A465534112123233142AF4-445222263342143-16--3-62253232887421326634222-----3233581521253254 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 279 STR:RPRED 93.6 SQ:SECSTR ccTTcTTTTcEEEEccccccccHHHHHHHHHHHTTcEEEEEEccTTTHHHHHHHHHHTTcccEEEccTTcHHHHHHHHH##HHHHHHccTTcEEEEccccGGccGccHHHHHHTTcEEEEEETTEEEEEcTTTccEEEEEGGGccHHHHHccccHHHHHHcGGGccccEEEccHHHHHHHHHHHHHHHTcccccHHHHGGGGcTTcTTccHHHHHHHHHHHccTTcccccHHHHHHHHHHHHcGGGTTccccHHHHHGGGccccccccccccccTTccccH################# DISOP:02AL 1-4, 297-298| PSIPRED ccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEcccHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHcccccEEEEEcccEEEEEccccccEEEEccccccccHHHHHHHHHHHHHHcc //