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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57440.1
DDBJ      :             putative oxidoreductase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  33/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.2.1c.3.1
:589 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   46->104 2jb1A PDBj 1e-05 50.0 %
:RPS:PDB   50->539 2bxrA PDBj 3e-17 13.8 %
:RPS:SCOP  38->87 1f8rA1  c.3.1.2 * 1e-11 44.0 %
:RPS:SCOP  47->72,205->403 1sezA1  c.3.1.2 * 7e-10 8.8 %
:HMM:SCOP  10->78 1ygyA1 c.2.1.4 * 0.00017 33.3 %
:HMM:SCOP  48->549 1o5wA1 c.3.1.2 * 1.1e-33 24.8 %
:RPS:PFM   50->103 PF01266 * DAO 7e-06 51.1 %
:RPS:PFM   293->336 PF04820 * Trp_halogenase 1e-04 34.1 %
:RPS:PFM   377->459 PF04168 * DUF403 3e-04 36.2 %
:HMM:PFM   445->547 PF01593 * Amino_oxidase 1.5e-09 37.2 86/449  
:HMM:PFM   50->85 PF01266 * DAO 2.6e-09 47.2 36/358  
:HMM:PFM   294->339 PF01266 * DAO 4.6e-05 28.9 45/358  
:HMM:PFM   9->33 PF10518 * TAT_signal 2.4e-05 36.0 25/26  
:BLT:SWISS 38->76 MNMC_ENT38 2e-04 46.2 %
:BLT:SWISS 50->540 ZDS_ARATH 5e-10 28.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57440.1 GT:GENE BAD57440.1 GT:PRODUCT putative oxidoreductase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2762801..2764570) GB:FROM 2762801 GB:TO 2764570 GB:DIRECTION - GB:PRODUCT putative oxidoreductase GB:PROTEIN_ID BAD57440.1 LENGTH 589 SQ:AASEQ MDDKRPGIVNRRDVLRGALAAGLGLAATAPAAAAQRRRTPWLRTGGGRSVAIFGGGVAGLSAAHELVERGYQVTVYEPAHLGGKARSMAVPGTARDGRLDLPGEHGFRFFPGCYQNIPEMMRRIPFPGNPNGVADNLIRVEGTVAGFRGRPPIFVPVEVGAIDQLTPQRLQNTVVGGLSFIPELPPDELAFFGRQMMMWFTSCDARRFGQWEHMTWAQALRAEGKSAAYREYLVSALTRITVAAKPHMSSARTIGTIGEALVLAGTGLIKEYSGGIDRILNRPTNEAWIDPWVDHLRASGVRFVLGRAANALELAEGQIAAVRLSGGERVTADWYVCAMPVERTVPLLSNAVLDADPSLAGMRELVVDWMVGIQYYLRTPTDIPEGHIAALGSPWALTALRQAPMWVGDFAARYGDGTVRECLSVDISDWDTPGILYGRTAKECSAEEIAAEVWAQLKEWLNTATGWLRDEDVHSWHLDPGITWGRGGIENATPLLVNTVGSYANRPEARCAIPNLFFGGDHVRNHIDLATMEGANESGRAAANAIMDAADDPGPRAPIFPLVRVPVFEAAKAIDADRYRAGLPHVLDV GT:EXON 1|1-589:0| BL:SWS:NREP 2 BL:SWS:REP 38->76|MNMC_ENT38|2e-04|46.2|39/666| BL:SWS:REP 50->540|ZDS_ARATH|5e-10|28.9|425/558| SEG 17->34|galaaglglaatapaaaa| SEG 541->552|aaanaimdaadd| BL:PDB:NREP 1 BL:PDB:REP 46->104|2jb1A|1e-05|50.0|54/477| RP:PDB:NREP 1 RP:PDB:REP 50->539|2bxrA|3e-17|13.8|427/445| RP:PFM:NREP 3 RP:PFM:REP 50->103|PF01266|7e-06|51.1|47/354|DAO| RP:PFM:REP 293->336|PF04820|1e-04|34.1|44/268|Trp_halogenase| RP:PFM:REP 377->459|PF04168|3e-04|36.2|80/309|DUF403| HM:PFM:NREP 4 HM:PFM:REP 445->547|PF01593|1.5e-09|37.2|86/449|Amino_oxidase| HM:PFM:REP 50->85|PF01266|2.6e-09|47.2|36/358|DAO| HM:PFM:REP 294->339|PF01266|4.6e-05|28.9|45/358|DAO| HM:PFM:REP 9->33|PF10518|2.4e-05|36.0|25/26|TAT_signal| GO:PFM:NREP 1 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01266|IPR006076| RP:SCP:NREP 2 RP:SCP:REP 38->87|1f8rA1|1e-11|44.0|50/370|c.3.1.2| RP:SCP:REP 47->72,205->403|1sezA1|7e-10|8.8|219/353|c.3.1.2| HM:SCP:REP 10->78|1ygyA1|0.00017|33.3|69/0|c.2.1.4|1/1|NAD(P)-binding Rossmann-fold domains| HM:SCP:REP 48->549|1o5wA1|1.1e-33|24.8|298/0|c.3.1.2|1/1|FAD/NAD(P)-binding domain| OP:NHOMO 39 OP:NHOMOORG 35 OP:PATTERN -------------------------11----------------------------------------- --1------------1111-1---1-11111--2222----------------------------------------------------------------------------------------1111111111-----------1--1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 506 STR:RPRED 85.9 SQ:SECSTR ##################################cccccccccccccEEEEEEcccHHHHHHHHHHHHTTccEEEEccccccTTccEEEETTTcEEEEEEcccccccTTcHHHHHHHHHTHHHHTccEEEcTccEEEcccccEEEEEccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccTTcGGGcTTHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHTHcccGGGccHHHHHHHHHTTTHHHTTTTGGGcHHccccccEEETTcTHHHHHHHHHHHGGGEETTccEEEEEcEccccEEEEETTccEEEEEEEEEcccHHHHTTcEEEccccHHHHHHGGGcccccEEEEEEEccccHHHHTTEEEEEEEccTTccccEEEEcccTTccccEEEEEEEEEEcTHHHHHHTHETHHHHHHHTccHHHHHHHHHHHHHHHHcGGGGcccEEEEEEcTTcTTTcccccccccTTTTccTHcHHHHTGGGTTcccTTEEEccGGGccccTTTcHHHHHHHHH################################################# DISOP:02AL 1-3, 32-44| PSIPRED ccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEccccccEEEEEEEccccccccccccccccEEEEccccHHHHHHHHHcccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccHHHHHHHHHHHHHHcccEEEEccEEEEEEEcccEEEEEEEcccEEEEEEEEEEEccHHHHHHHccHHHHHHHHHHHHHHHccccEEEEEEEEEccccccccccccccccccccEEEccccccccccccccccccEEEEEEEEEccccccccHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccEEEccccEEEccccccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHccccHHHHHHcccHHHcc //