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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57443.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  15/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:187 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->152 2pz9A PDBj 4e-20 38.1 %
:RPS:PDB   6->182 2d6yA PDBj 1e-08 25.6 %
:RPS:SCOP  6->62 2d6yA1  a.4.1.9 * 2e-07 38.6 %
:RPS:SCOP  75->184 2d6yA2  a.121.1.1 * 4e-06 27.3 %
:HMM:SCOP  1->84 1t33A1 a.4.1.9 * 2e-17 45.8 %
:HMM:SCOP  74->185 2d6yA2 a.121.1.1 * 3.5e-17 29.5 %
:HMM:PFM   12->58 PF00440 * TetR_N 9.3e-14 46.8 47/47  
:HMM:PFM   89->170 PF03448 * MgtE_N 0.00061 14.6 82/102  
:HMM:PFM   52->116 PF01110 * CNTF 0.00064 32.8 61/199  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57443.1 GT:GENE BAD57443.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2766810..2767373) GB:FROM 2766810 GB:TO 2767373 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57443.1 LENGTH 187 SQ:AASEQ MRAAGEATRERILAAAKAEFAEFGVAGARINRIATAARASKDRLYAYFPGKDELYAAVTERWTAQTTAETALAADDLPGYVGRLFDHFLANPDNARLQAWADLEPTTHAAVATVLKAAIAPKLAEIRRGQAAGTVTTEFHPAALLRILTDLARTSATHAIQATSGPSRAAQREAIVLAARRLVEPRP GT:EXON 1|1-187:0| SEG 26->39|agarinriataara| SEG 63->74|taqttaetalaa| SEG 106->120|tthaavatvlkaaia| BL:PDB:NREP 1 BL:PDB:REP 7->152|2pz9A|4e-20|38.1|139/177| RP:PDB:NREP 1 RP:PDB:REP 6->182|2d6yA|1e-08|25.6|176/182| HM:PFM:NREP 3 HM:PFM:REP 12->58|PF00440|9.3e-14|46.8|47/47|TetR_N| HM:PFM:REP 89->170|PF03448|0.00061|14.6|82/102|MgtE_N| HM:PFM:REP 52->116|PF01110|0.00064|32.8|61/199|CNTF| RP:SCP:NREP 2 RP:SCP:REP 6->62|2d6yA1|2e-07|38.6|57/68|a.4.1.9| RP:SCP:REP 75->184|2d6yA2|4e-06|27.3|110/118|a.121.1.1| HM:SCP:REP 1->84|1t33A1|2e-17|45.8|83/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 74->185|2d6yA2|3.5e-17|29.5|112/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 22 OP:NHOMOORG 15 OP:PATTERN -------------------------------------------------------------------- ----2---------2---------1-------1---1221----1----21-------------1---3-------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 186 STR:RPRED 99.5 SQ:SECSTR #ccHHccHHHHHHHHHHHHHHHHTTTcccHHHHHHHHTccHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccGGGHHHHHHHHHHHHHHcTHHHHHHHHHHHHTTcccTTHHHHHHHHHHHHHHHHHHHHTTcccccccHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHHHHHHHH DISOP:02AL 1-6| PSIPRED ccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccc //