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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57457.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  158/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13d.17.4
:291 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   30->160 1or7A PDBj 1e-04 24.0 %
:RPS:PDB   11->161 3dxjF PDBj 8e-14 9.3 %
:RPS:SCOP  8->71 1h3lA  a.177.1.1 * 5e-09 31.2 %
:HMM:SCOP  2->71 1h3lA_ a.177.1.1 * 1.1e-13 37.1 %
:HMM:SCOP  99->166 1or7A1 a.4.13.2 * 3.4e-08 33.8 %
:HMM:SCOP  169->286 1qjgA_ d.17.4.3 * 1.1e-07 31.3 %
:RPS:PFM   21->73 PF04542 * Sigma70_r2 2e-04 43.4 %
:HMM:PFM   11->75 PF04542 * Sigma70_r2 1.4e-16 46.2 65/71  
:HMM:PFM   109->159 PF08281 * Sigma70_r4_2 5.7e-10 33.3 51/54  
:BLT:SWISS 15->86 SIGW_BACSU 6e-05 34.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57457.1 GT:GENE BAD57457.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2780026..2780901) GB:FROM 2780026 GB:TO 2780901 GB:DIRECTION - GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD57457.1 LENGTH 291 SQ:AASEQ MDEPQQLAGRFERQRGRLLGLAYRMLGGMGEAEDAVQEAWLRLSRADTADVVNLDAWLTTVVSRICLDMLRTRGARREEPLDAATALLRPAPGRAPEEEAALVDSVGRALLVVLDRLGPDERVAFVLHDLFAVPFEQIAPIVDRSAATTKKLASRARARVRGEQTAADPDLPHHRAVVQAFLDAARGGDIAALLRVLAPEVVRTADPAALPAGAAPVVRGADAVVRETLLLRTRAAAADLALVDGRVGVVVAPAGRLLLALRITVADGRVAGYEVVAEPARLARLSLAVLD GT:EXON 1|1-291:0| BL:SWS:NREP 1 BL:SWS:REP 15->86|SIGW_BACSU|6e-05|34.3|70/187| SEG 89->101|rpapgrapeeeaa| SEG 205->262|adpaalpagaapvvrgadavvretlllrtraaaadlalvdgrvgvvvapagrlllalr| BL:PDB:NREP 1 BL:PDB:REP 30->160|1or7A|1e-04|24.0|129/181| RP:PDB:NREP 1 RP:PDB:REP 11->161|3dxjF|8e-14|9.3|151/349| RP:PFM:NREP 1 RP:PFM:REP 21->73|PF04542|2e-04|43.4|53/70|Sigma70_r2| HM:PFM:NREP 2 HM:PFM:REP 11->75|PF04542|1.4e-16|46.2|65/71|Sigma70_r2| HM:PFM:REP 109->159|PF08281|5.7e-10|33.3|51/54|Sigma70_r4_2| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| RP:SCP:NREP 1 RP:SCP:REP 8->71|1h3lA|5e-09|31.2|64/75|a.177.1.1| HM:SCP:REP 2->71|1h3lA_|1.1e-13|37.1|70/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 99->166|1or7A1|3.4e-08|33.8|68/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 169->286|1qjgA_|1.1e-07|31.3|115/125|d.17.4.3|1/1|NTF2-like| OP:NHOMO 289 OP:NHOMOORG 159 OP:PATTERN -------------------------------------------------------------------- -11-C1-11111--55522-23--34222221533361531325191-1-----------323-1157D7------------1-------------------------------------------------------------2-1-------------------1---------------------------111111-1-1111-1-111--111-------------14----------------------------------------------------------------------------------------------------------------------1---------------------1--1111-------1---111--1-----------1-121-12-1-11-1---111111111------11-11-1-------------------------------------------------11--111-122111-11111132111111211-1-1--11----111-1-1---------------------------------------------1-621312--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------22----------------11---------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 151 STR:RPRED 51.9 SQ:SECSTR ##########HHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHcTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHH################################################################################################################################## DISOP:02AL 1-2, 164-174| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHcHHHEEEccccccccccccccccHHHHHHHHHHHccccccEEEEEEcccEEEEEEEcccEEEEEEEEEEccEEEEEEEEEcHHHHHHHHHHHcc //