[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57466.1
DDBJ      :             putative glycosyl hydrolase
Swiss-Prot:             

Homologs  Archaea  16/68 : Bacteria  380/915 : Eukaryota  125/199 : Viruses  0/175   --->[See Alignment]
c.1.15c.1.8c.1.9
:440 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   44->379 1vffA PDBj 8e-37 35.2 %
:RPS:PDB   42->380 1e4nA PDBj 7e-52 26.5 %
:RPS:SCOP  42->230 1d8wA  c.1.15.2 * 1e-29 11.5 %
:RPS:SCOP  302->380 1j5sA  c.1.9.8 * 1e-07 7.6 %
:HMM:SCOP  38->421 1qvbA_ c.1.8.4 * 1.1e-89 33.1 %
:RPS:PFM   43->379 PF00232 * Glyco_hydro_1 5e-33 35.6 %
:HMM:PFM   40->232 PF00232 * Glyco_hydro_1 6.3e-40 34.9 192/455  
:HMM:PFM   288->407 PF00232 * Glyco_hydro_1 1.5e-22 31.4 118/455  
:HMM:PFM   5->27 PF10518 * TAT_signal 0.00033 43.5 23/26  
:BLT:SWISS 44->379 BGLA_THEMA 1e-32 35.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57466.1 GT:GENE BAD57466.1 GT:PRODUCT putative glycosyl hydrolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2789845..2791167) GB:FROM 2789845 GB:TO 2791167 GB:DIRECTION - GB:PRODUCT putative glycosyl hydrolase GB:PROTEIN_ID BAD57466.1 LENGTH 440 SQ:AASEQ MRSPRRRHVLAVVAATTAALLLGGPTTAQAQPAPDRVAPLGNDFLWGVASSGYQSEGHAPDSNWSRYVAQGKTEDPYANSVDFFGRYRSDIQLAADLGVRVYRIGIEWARVQPRPGEWDEQGFRFYDDVVAAIRAAGMRPMITLDHWVYPGWAVDRGGWGNPGIVEDWLINARRVVDRYASADPLWVTFNEPLMYQINEVRHGGLSPTDVPAMHDRIARAHNAIYDHIHAVQPGAMVTSNVAYIPAVEDVVNKPLLDKIGGKLDYIGIDYYYGVAPDAVTEQWSFAELWKNPLHAEGIYHALRHYARAFPGKPLYIVENGMPTENGHPRADGYGRADNLRDTVYWLQRAVADGMNVLGYNYWSLTDNYEWGSYTPRFGLYTVDVRTDPTLTRRPTDAVAAYREITASGGVPADYRPTRDPKLCSLVDGLSSCLEPVTLPR GT:EXON 1|1-440:0| BL:SWS:NREP 1 BL:SWS:REP 44->379|BGLA_THEMA|1e-32|35.3|323/446| SEG 9->28|vlavvaattaalllggptta| SEG 381->396|tvdvrtdptltrrptd| BL:PDB:NREP 1 BL:PDB:REP 44->379|1vffA|8e-37|35.2|318/423| RP:PDB:NREP 1 RP:PDB:REP 42->380|1e4nA|7e-52|26.5|336/489| RP:PFM:NREP 1 RP:PFM:REP 43->379|PF00232|5e-33|35.6|334/450|Glyco_hydro_1| HM:PFM:NREP 3 HM:PFM:REP 40->232|PF00232|6.3e-40|34.9|192/455|Glyco_hydro_1| HM:PFM:REP 288->407|PF00232|1.5e-22|31.4|118/455|Glyco_hydro_1| HM:PFM:REP 5->27|PF10518|0.00033|43.5|23/26|TAT_signal| GO:PFM:NREP 2 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF00232|IPR001360| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00232|IPR001360| RP:SCP:NREP 2 RP:SCP:REP 42->230|1d8wA|1e-29|11.5|183/402|c.1.15.2| RP:SCP:REP 302->380|1j5sA|1e-07|7.6|79/451|c.1.9.8| HM:SCP:REP 38->421|1qvbA_|1.1e-89|33.1|372/0|c.1.8.4|1/1|(Trans)glycosidases| OP:NHOMO 1671 OP:NHOMOORG 521 OP:PATTERN --1-1--1-------1-311111--------------------------------21-1-2-11---- -11-3-----21211------1---1------1---12111--321--242-243-----23213-3357211111--1---1------------------1---111-1--------------------------12222---211--1----------------1--1-------------11-1122-115-----1-11--1---3366741-1-33-2179AAB9A-1-2222222222222211111781-561-715BB--682-5334676223533454466655564635444444444444444411-544C1--7B222321311119---1121-22-111--------2---1321--3-1-311--------322---1-111----------1-------------111211111111-----11-111111--------------2---------------------------------2-1------111--1-------11--------1---------1-------2---------1------------------1-----------------------24-----------------------------1161-21---11111111--------1--1-------------3675-813223344444-23343234342422333348A89A12-212222222222222252211233--511111111111-------------1-1-1---1-------------------------1------------------------11211111121211-----------------1--------------1------9------------12------2212111-111-- -1-------------42213553333311-----------------3222355642211111----------1----------------242223--1-1--------A1S677A682112244321334B3-3352324633442532342392332635O-574G16A6222--22--11127CLTW2oJ11DFGF1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 381 STR:RPRED 86.6 SQ:SECSTR ###############################GGcccGGGccTTcEEEEEccHHHHccTccccHHHHHcTTcccccccccTTcHHHHHHHHHHHHHHHTccEEEEEccHHHHcTTcTcccHHHHHHHHHHHHHHHHTTcEEEEEEEcccccHHHHHHcGGGcTTHHHHHHHHHHHHHHHHTTTccEEEEEEcHHHHHHHHHTccccTTTTccTTTHHHHHHHHHHHHHHHHHHTTcEEEEEEEEEEEEHHHHTHHHHHHHTTcccEEEEEEEEEEEEEEccccTTcccccGGcccHHHHHHHHHHHHHTcccccEEEEEccccEEccccccccHHHHHHHHHHHHHHHHHHHTTccEEEEEEEcccccccGGGTcEEcccEHHHEEETTTTEEEEcHHHHHHHHHHHHTEEcH############################ DISOP:02AL 1-5, 27-36| PSIPRED ccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEcccHHHHccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHccccEEEEccEEcccccccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEcccHHHHcccHHHHHHHHHHHHcccccEEEEcccccEEEEccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccccccccEEEEEEccccccccEEEcHHHHHHHHHHHHccccccccccccccccEEccccccccccccccc //