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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57471.1
DDBJ      :             putative integrase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  27/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.60.9d.163.1
:400 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   69->138,345->388 1xo0A PDBj 5e-06 45.5 %
:RPS:PDB   44->398 3crxA PDBj 5e-13 18.8 %
:RPS:SCOP  44->84 1a0pA1  a.60.9.1 * 2e-05 29.3 %
:RPS:SCOP  164->398 1crxA2  d.163.1.1 * 3e-10 21.0 %
:HMM:SCOP  36->154 4crxA1 a.60.9.1 * 9.2e-28 50.0 %
:HMM:SCOP  152->399 4crxA2 d.163.1.1 * 3.1e-35 34.3 %
:HMM:PFM   319->387 PF00589 * Phage_integrase 3.7e-10 27.9 68/173  
:HMM:PFM   49->122 PF02899 * Phage_integr_N 1.6e-07 32.8 67/84  
:BLT:SWISS 48->398 XERD_SELRU 3e-27 34.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57471.1 GT:GENE BAD57471.1 GT:PRODUCT putative integrase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2794177..2795379) GB:FROM 2794177 GB:TO 2795379 GB:DIRECTION - GB:PRODUCT putative integrase GB:PROTEIN_ID BAD57471.1 LENGTH 400 SQ:AASEQ MPEGTVVVAVPDSVRGELRRGVGSVLVDAAALRLVRERFDDGQADALRRYLEASQSPNTLRAYRTDWVAWAAWCAREGRQALPAEPLDVAVYLAAAADARREDGAWAFGPATLERKSAAIAAVHAANGLPSPTRSDVVRLTLRGIRRTRRSAPTRKRPVLLHTLEQLLDGLPEPGWPGEPARRRDTLALLMGFAGALRRSELAGLRLGDVEQRTDHATGEPLLLLHLPTTKTDPTGTAEHRVVLPRGKHPRTCPVCAYADWLRLLDIHHRGGTDAVRAYCARTHHDPALHRCHGFTGSTGGHPDAPLLPTITRHGHIGARPLSGRAVAELVKRYAARAGLDPALFSGHSLRAGFATQAALGGAGDREIMRQGRWSNLRTVHGYIRTADPLQDNAVTKLGL GT:EXON 1|1-400:0| BL:SWS:NREP 1 BL:SWS:REP 48->398|XERD_SELRU|3e-27|34.0|297/341| SEG 87->101|ldvavylaaaadarr| SEG 139->157|rltlrgirrtrrsaptrkr| SEG 218->235|tgepllllhlpttktdpt| BL:PDB:NREP 1 BL:PDB:REP 69->138,345->388|1xo0A|5e-06|45.5|107/322| RP:PDB:NREP 1 RP:PDB:REP 44->398|3crxA|5e-13|18.8|314/323| HM:PFM:NREP 2 HM:PFM:REP 319->387|PF00589|3.7e-10|27.9|68/173|Phage_integrase| HM:PFM:REP 49->122|PF02899|1.6e-07|32.8|67/84|Phage_integr_N| RP:SCP:NREP 2 RP:SCP:REP 44->84|1a0pA1|2e-05|29.3|41/91|a.60.9.1| RP:SCP:REP 164->398|1crxA2|3e-10|21.0|195/212|d.163.1.1| HM:SCP:REP 36->154|4crxA1|9.2e-28|50.0|110/0|a.60.9.1|1/1|lambda integrase-like, N-terminal domain| HM:SCP:REP 152->399|4crxA2|3.1e-35|34.3|201/212|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 32 OP:NHOMOORG 27 OP:PATTERN -------------------------------------------------------------------- ---------------1--------------------2-11-111--------------------------1-----------------------------------------------------2------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----1-----------------1--2---1-131--------11---------1---1--------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------111------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 353 STR:RPRED 88.2 SQ:SECSTR ###########################################HHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHTcccccccHHHHHHHHHHHHHTTcHHHHTTccHHHHHHHHHHHHHHHHTTTcccGGGcHHHHHHHHHHHHHHHHTTccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHTccHHHHHHcccTTEEEcccccEEEEETTTE##EEEEEETTEcccccccccccccccccccHHHHHHHHHHTccTTccHHHHHHHHHHHHHHcGGGcTTcccccEEcTTccEEccccccccHHHHHHHHHHHHHHHHccccccccccccccTTHHHHHHHHHHHHTcccHHHHHHHTTcccHHHHHHHcTTccccccHHHHHH## DISOP:02AL 1-2, 147-156| PSIPRED ccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHcccHHHHcccccccccccEEEEEEEEccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcc //