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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57473.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  57/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.198.1a.4.5
:313 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  96->151 1qz4A  a.198.1.1 * 2e-04 30.4 %
:HMM:SCOP  1->54 1biaA1 a.4.5.1 * 1.2e-07 41.5 %
:HMM:PFM   2->48 PF08279 * HTH_11 4.1e-17 52.2 46/55  
:HMM:PFM   94->146 PF04356 * DUF489 1.3e-05 30.2 53/193  
:BLT:SWISS 21->183 YOBV_BACSU 2e-04 22.6 %
:BLT:SWISS 154->211 PAFC_MYCTU 2e-04 39.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57473.1 GT:GENE BAD57473.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2796594..2797535) GB:FROM 2796594 GB:TO 2797535 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57473.1 LENGTH 313 SQ:AASEQ MLLLRQRGRATAAELAAELEVSTRTVLRDIDALSTAGVPVYAERGRYGGFALLPGFRTELTGLNHDEALALLIAGSRRGAQAFGLDSALASAMLKVVDALPDTYRDTAADIAERLLIDPRTDLLSRPLAAEEIPGTVLAEIRRAVLSGHRLRIHYAAVDQPPRWRTVDPIGLVVARGQTYLLATRSGADRTYRLARVLAAEELPDPAQRPEQVDLDQIWQERSIRFRTGGDQITVLLRLNPARRDDLVTTALAVLTEEPDTDGRLRMEVTFQDTRHAEWALWQLGIDAEALAPPALRAALHDRAAAIAARYER GT:EXON 1|1-313:0| BL:SWS:NREP 2 BL:SWS:REP 21->183|YOBV_BACSU|2e-04|22.6|155/313| BL:SWS:REP 154->211|PAFC_MYCTU|2e-04|39.7|58/316| SEG 10->20|ataaelaaele| SEG 288->310|aealappalraalhdraaaiaar| HM:PFM:NREP 2 HM:PFM:REP 2->48|PF08279|4.1e-17|52.2|46/55|HTH_11| HM:PFM:REP 94->146|PF04356|1.3e-05|30.2|53/193|DUF489| RP:SCP:NREP 1 RP:SCP:REP 96->151|1qz4A|2e-04|30.4|56/213|a.198.1.1| HM:SCP:REP 1->54|1biaA1|1.2e-07|41.5|53/0|a.4.5.1|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 88 OP:NHOMOORG 57 OP:PATTERN -------------------------------------------------------------------- -1--2---------------------------1---4133-31212-----------2---2--312234----------1------------------------1----------------------------------1---2----------------------------------------------------------------1122--------1---------34--------------------------------------------------------------------------------------------1----------1--1-----------1------------------------1--------1-111---1--------------------------------------1-------1------1----------------------------------------------------------------------11------1------------------1-----------------------------------------------------11------------------------------------1--------------------------1-1--------------------------------------------------------------------------------------------------------1-1------------------------------------------------------------------------------------------11------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 5-7, 312-313| PSIPRED cEEccccccccHHHHHHHHcccHHHHHHHHHHHHHccccEEEEcccccEEEEccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHcccccccccccHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEEEEEEEEccEEEEEEEEccccEEEEEEEEEEEEEccccccccccccHHHHHHHHHcccccccccEEEEEEEcHHHHHHHHHHccccEEEEEccccEEEEEEEcccHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHcc //