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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57474.1
DDBJ      :             putative endoribonuclease
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  6/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.79.1
:133 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->119 1pf5A PDBj 3e-04 26.3 %
:RPS:PDB   5->132 2dyyI PDBj 3e-15 24.8 %
:RPS:SCOP  4->132 1pf5A  d.79.1.1 * 4e-15 25.6 %
:HMM:SCOP  2->133 1nq3A_ d.79.1.1 * 7.3e-23 36.2 %
:RPS:PFM   32->131 PF01042 * Ribonuc_L-PSP 2e-05 32.3 %
:HMM:PFM   28->132 PF01042 * Ribonuc_L-PSP 6e-20 33.0 103/121  
:BLT:SWISS 2->119 YJGH_ECOLI 6e-04 25.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57474.1 GT:GENE BAD57474.1 GT:PRODUCT putative endoribonuclease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2797690..2798091 GB:FROM 2797690 GB:TO 2798091 GB:DIRECTION + GB:PRODUCT putative endoribonuclease GB:PROTEIN_ID BAD57474.1 LENGTH 133 SQ:AASEQ MVAERTAINPVTWSLAMGFNQGELVTGHTRTLYCSGQTAMSADGQPCHDGDMAAQLALSLDNVEAVLAAGGMSLANLVRLDVYTTDVDLLLEHYGVLAGRLGAAGVAPATTMLGVTRLAVPGQLVELEATAVE GT:EXON 1|1-133:0| BL:SWS:NREP 1 BL:SWS:REP 2->119|YJGH_ECOLI|6e-04|25.9|116/100| SEG 77->91|lvrldvyttdvdlll| SEG 95->107|gvlagrlgaagva| BL:PDB:NREP 1 BL:PDB:REP 4->119|1pf5A|3e-04|26.3|114/130| RP:PDB:NREP 1 RP:PDB:REP 5->132|2dyyI|3e-15|24.8|113/116| RP:PFM:NREP 1 RP:PFM:REP 32->131|PF01042|2e-05|32.3|99/119|Ribonuc_L-PSP| HM:PFM:NREP 1 HM:PFM:REP 28->132|PF01042|6e-20|33.0|103/121|Ribonuc_L-PSP| RP:SCP:NREP 1 RP:SCP:REP 4->132|1pf5A|4e-15|25.6|125/130|d.79.1.1| HM:SCP:REP 2->133|1nq3A_|7.3e-23|36.2|127/0|d.79.1.1|1/1|YjgF-like| OP:NHOMO 6 OP:NHOMOORG 6 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1--------1------------------1----1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 132 STR:RPRED 99.2 SQ:SECSTR cccccEEEcccccccccccccEEEEEEETTEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHTTccGGGEEEEEEEEcccTHHHHHEEcccHHHHHTTTccEEEEEEccccGGGGccEEEEEEEE# DISOP:02AL 1-2| PSIPRED ccccEEEEcccccccccccccEEEEEccccEEEEEEEEcccccccEEccccHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEEcHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccEEEEEEEEEc //