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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57485.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  35/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:190 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->70 2vkeA PDBj 5e-08 41.5 %
:RPS:PDB   18->189 3dcfB PDBj 9e-09 17.6 %
:RPS:SCOP  18->77 2iu5A1  a.4.1.9 * 2e-08 13.3 %
:RPS:SCOP  97->189 1zk8A2  a.121.1.1 * 9e-09 21.8 %
:HMM:SCOP  2->90 1t33A1 a.4.1.9 * 8.5e-14 29.5 %
:HMM:SCOP  84->180 1zk8A2 a.121.1.1 * 1.2e-17 38.5 %
:HMM:PFM   18->64 PF00440 * TetR_N 2.1e-14 38.3 47/47  
:BLT:SWISS 18->70 TETR8_PASPI 1e-07 41.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57485.1 GT:GENE BAD57485.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2806069..2806641) GB:FROM 2806069 GB:TO 2806641 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57485.1 LENGTH 190 SQ:AASEQ MGIQSRRERERAERHRLIVDTARELAETEGWDAVTVRKLADRIEYSQPVLYSHFAGKRAIVTAVALDGIAELAEALHRARTSAPDAPAALAAVARAYTDFAASHPALYDAMFSQPTDLTFGEGAPEPLRAAFAELVATFAPFAAATDVETLTETVWSTLHGLASLERDARLRPGLRDQRLAILERWLTGA GT:EXON 1|1-190:0| BL:SWS:NREP 1 BL:SWS:REP 18->70|TETR8_PASPI|1e-07|41.5|53/218| SEG 6->16|rrereraerhr| SEG 78->96|rartsapdapaalaavara| BL:PDB:NREP 1 BL:PDB:REP 18->70|2vkeA|5e-08|41.5|53/200| RP:PDB:NREP 1 RP:PDB:REP 18->189|3dcfB|9e-09|17.6|170/181| HM:PFM:NREP 1 HM:PFM:REP 18->64|PF00440|2.1e-14|38.3|47/47|TetR_N| RP:SCP:NREP 2 RP:SCP:REP 18->77|2iu5A1|2e-08|13.3|60/71|a.4.1.9| RP:SCP:REP 97->189|1zk8A2|9e-09|21.8|87/105|a.121.1.1| HM:SCP:REP 2->90|1t33A1|8.5e-14|29.5|88/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 84->180|1zk8A2|1.2e-17|38.5|91/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 43 OP:NHOMOORG 35 OP:PATTERN -------------------------------------------------------------------- 11--1--------------------1-------1111------1---2----------------1--32--------------------------------1---1-2-2------------------------1---------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------221------------------------------------------111----111---1---1------------------------------------------------------------------------------1---------1----------------------------------------------------1-----------------11-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 173 STR:RPRED 91.1 SQ:SECSTR #################HHHHHHHHHHHTcTTTccHHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHTccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHTHHHHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHTHHHHccTTcccccHHHHHHHHHHHHHHcc DISOP:02AL 1-16| PSIPRED ccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcc //