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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57498.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  7/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:185 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  4->177 1yg2A  a.4.5.61 * 2e-08 19.9 %
:HMM:SCOP  3->178 1yg2A_ a.4.5.61 * 1.8e-28 36.6 %
:RPS:PFM   11->86 PF03551 * PadR 1e-06 37.8 %
:HMM:PFM   3->85 PF03551 * PadR 7e-16 33.8 80/86  
:HMM:PFM   106->176 PF10400 * Vir_act_alpha_C 1.1e-07 29.6 71/90  
:BLT:SWISS 2->59 YT37_STRFR 6e-05 42.6 %
:BLT:SWISS 37->121 RIMK_PSEU2 9e-04 29.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57498.1 GT:GENE BAD57498.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2817195..2817752) GB:FROM 2817195 GB:TO 2817752 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57498.1 LENGTH 185 SQ:AASEQ MNETRLFVLAALAKRGPMHGHQLRRDARLDRADLWSRVRPGSLYSALHRMADEGLIRPLRTEQSGALPARTVYEITGEGHRELRALRDEAFSEVDIRPDPVDLALAVSEDLDGELLRGYVEDRLAALRARRSTLEHQLDRRWPDQTAADDLVVEHATLRIQAEIDWHEKVLAHIDKLDTGRAPNR GT:EXON 1|1-185:0| BL:SWS:NREP 2 BL:SWS:REP 2->59|YT37_STRFR|6e-05|42.6|54/345| BL:SWS:REP 37->121|RIMK_PSEU2|9e-04|29.8|84/100| SEG 23->34|lrrdarldradl| SEG 123->131|rlaalrarr| RP:PFM:NREP 1 RP:PFM:REP 11->86|PF03551|1e-06|37.8|74/84|PadR| HM:PFM:NREP 2 HM:PFM:REP 3->85|PF03551|7e-16|33.8|80/86|PadR| HM:PFM:REP 106->176|PF10400|1.1e-07|29.6|71/90|Vir_act_alpha_C| RP:SCP:NREP 1 RP:SCP:REP 4->177|1yg2A|2e-08|19.9|161/169|a.4.5.61| HM:SCP:REP 3->178|1yg2A_|1.8e-28|36.6|172/0|a.4.5.61|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 8 OP:NHOMOORG 7 OP:PATTERN -------------------------------------------------------------------- ------------------------------------2-1----------------------------111------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 62-66, 179-185| PSIPRED ccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccEEEEEcccccccccccEEEEcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc //