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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57517.1
DDBJ      :             putative DNA polymerase IV family protein
Swiss-Prot:             

Homologs  Archaea  28/68 : Bacteria  716/915 : Eukaryota  163/199 : Viruses  0/175   --->[See Alignment]
d.240.1e.8.1
:433 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   43->238 3hedB PDBj 2e-30 38.8 %
:RPS:PDB   44->380 3bq1A PDBj 9e-61 21.7 %
:RPS:SCOP  44->240 1t94A2  e.8.1.7 * 8e-56 37.1 %
:RPS:SCOP  276->379 1jx4A1  d.240.1.1 * 6e-09 15.0 %
:HMM:SCOP  42->271 1k1sA2 e.8.1.7 * 6.5e-81 51.3 %
:HMM:SCOP  277->390 1unnC_ d.240.1.1 * 1e-22 36.7 %
:RPS:PFM   48->189 PF00817 * IMS 2e-26 50.7 %
:RPS:PFM   266->338 PF11799 * IMS_C 1e-05 31.5 %
:HMM:PFM   48->188 PF00817 * IMS 9.2e-51 49.6 141/150  
:HMM:PFM   250->359 PF11799 * IMS_C 8.9e-15 30.6 108/135  
:HMM:PFM   201->232 PF11798 * IMS_HHH 7.7e-11 40.6 32/33  
:BLT:SWISS 42->390 DPO42_RHILO 1e-69 44.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57517.1 GT:GENE BAD57517.1 GT:PRODUCT putative DNA polymerase IV family protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2837743..2839044) GB:FROM 2837743 GB:TO 2839044 GB:DIRECTION - GB:PRODUCT putative DNA polymerase IV family protein GB:PROTEIN_ID BAD57517.1 LENGTH 433 SQ:AASEQ MFVSESRLEPPSPTVRGRGGIGDAGAEPTRAPRPRIEARADASILHADLDSFYASVEQRDDPSLRGRPVIVGGGVVLAASYEAKAFGVRTPMNGARALRLCPQAVVVPPRMSAYAAASKAVFEVFRDTTPVVEGISIDEAFLDVAGLRRIAGEPIEIARRLRARVRDEVGLPISVGIARTKFLAKVASAVAKPDGLRLVEPERELEFLHPLPVERLWGVGDVTARTLHEHGITRIAQLAELGESGLRGFLGPAAARHLSALAMARDPRRVETGRRRRSLGAQRALGRRHRTPEEVAAYLHGLVDRLGRRLRAADRLCRTVVLRMRFDDFTRATRSHTLPVPTDDTATVLRAARLLLDAATPMIQQRGLTLIGLSLTNLVDADPLQLTLPLEPRPTGTLDRTLDELRRRFGSAAVTRAALITSGEGLSVPLLPD GT:EXON 1|1-433:0| BL:SWS:NREP 1 BL:SWS:REP 42->390|DPO42_RHILO|1e-69|44.7|347/415| SEG 65->76|rgrpvivgggvv| SEG 253->265|aaarhlsalamar| SEG 299->316|lhglvdrlgrrlraadrl| SEG 344->360|dtatvlraarllldaat| SEG 397->408|tldrtldelrrr| BL:PDB:NREP 1 BL:PDB:REP 43->238|3hedB|2e-30|38.8|196/437| RP:PDB:NREP 1 RP:PDB:REP 44->380|3bq1A|9e-61|21.7|332/344| RP:PFM:NREP 2 RP:PFM:REP 48->189|PF00817|2e-26|50.7|142/148|IMS| RP:PFM:REP 266->338|PF11799|1e-05|31.5|73/123|IMS_C| HM:PFM:NREP 3 HM:PFM:REP 48->188|PF00817|9.2e-51|49.6|141/150|IMS| HM:PFM:REP 250->359|PF11799|8.9e-15|30.6|108/135|IMS_C| HM:PFM:REP 201->232|PF11798|7.7e-11|40.6|32/33|IMS_HHH| GO:PFM:NREP 3 GO:PFM GO:0003684|"GO:damaged DNA binding"|PF00817|IPR001126| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00817|IPR001126| GO:PFM GO:0006281|"GO:DNA repair"|PF00817|IPR001126| RP:SCP:NREP 2 RP:SCP:REP 44->240|1t94A2|8e-56|37.1|197/308|e.8.1.7| RP:SCP:REP 276->379|1jx4A1|6e-09|15.0|100/101|d.240.1.1| HM:SCP:REP 42->271|1k1sA2|6.5e-81|51.3|230/0|e.8.1.7|1/1|DNA/RNA polymerases| HM:SCP:REP 277->390|1unnC_|1e-22|36.7|109/0|d.240.1.1|1/1|Lesion bypass DNA polymerase (Y-family), little finger domain| OP:NHOMO 1493 OP:NHOMOORG 907 OP:PATTERN ------1111111111--------11111111-----------1--11-2122--------1----11 211-211111111123322-23--242222223333323311-123121111343111--1131112242112222111123------2211-111---21512233222--------------1---111111-2-----111--4--------1111-111-1---1---1111111-1-1--------2-21111111111111212222221112-2222232222222111111111111111111111111221-11111--2211213-11111111111111111111111111111111111111111111111121111111111-1-21111111211211-211321-12221111111111-13111-----212232111121111111111112-23123112231-1222221222231111111111111111111111121121211-----------------------------11111-111111111111111111211111111111111-111112111121211111-11511111111112121111221221112222-212112123112111221--11---------------1-11122311121111111222211211121211111----121------23111322222222222-22242222222222222225321111222121312314333232-122221--211111111211---11-1114332-2122111111-----11112121111-111-112113121112211331-1111-1--212211121111112112111121------2-11--11--------1-1----1-1111111111111111111-1--------211 ----112-43A---12222222222222222222222212122111222222221222222211---------1------1-----22-23222222222-12221-141433233A-213223892738S4-56622-33-122231224218142321-323222312933632112D3222212422242223231 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 346 STR:RPRED 79.9 SQ:SECSTR ##########################################cEEEEEETTHHHHHHHHHcGGGTTccEEEEEcccEEEcHHHHHTTccTTccHHHHHHHcTTcEEEEccHHHHHHHHHHHHHHHHTTccEEEEEETTEEEEEcTTTTTcHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHTccccEEEccTTTHHHHHHHccGGGcTTccHHHHHHHHTTTcccGGGTTTccHHHHHHHHcHcHHHHHHHHHHTTccccccccEEcccEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEETTccEEEEEEEcTTcccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcEEcHTTEEEcc############################################# DISOP:02AL 18-38, 385-394, 430-433| PSIPRED cccccccccccHHHHHHHHHHHccccccccccccccccccccEEEEEEcccHHHHHHHHccccccccEEEEcccEEEEccHHHHHcccccccHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHcccEEEccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHcccccEEEEcHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHcHHHHHHHHHHHccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccc //