[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57532.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  116/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:205 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   12->60 2q24B PDBj 5e-08 52.1 %
:RPS:PDB   12->201 2dtzD PDBj 4e-15 10.7 %
:RPS:SCOP  12->64 1jt0A1  a.4.1.9 * 8e-12 24.5 %
:RPS:SCOP  86->202 1zk8A2  a.121.1.1 * 6e-09 21.8 %
:HMM:SCOP  5->81 2gfnA1 a.4.1.9 * 9.2e-15 33.8 %
:HMM:SCOP  82->202 1zk8A2 a.121.1.1 * 2.3e-22 41.9 %
:RPS:PFM   15->61 PF00440 * TetR_N 5e-06 46.8 %
:HMM:PFM   15->61 PF00440 * TetR_N 5.8e-16 48.9 47/47  
:HMM:PFM   134->158 PF08714 * Fae 0.00019 44.0 25/160  
:BLT:SWISS 12->60 BETI_PSEMY 5e-06 42.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57532.1 GT:GENE BAD57532.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2851832..2852449) GB:FROM 2851832 GB:TO 2852449 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57532.1 LENGTH 205 SQ:AASEQ MKRTSYHHGALRAELMAACLRLIETEGLAAVSLRRVAREAGVSSGAPYHHFPDRAALLAALSIEGFHLLAEELRSARAAAEGTPLDALGALAAAYVRFSRTRPAYFRLMFRPELSQPDKHPEAAAAGDAAFGVLAEAIGDCVAAGQLPADKADTLGITWWAVGHGLASLWLDGQLGKRSAQLGTTAPELTDDVLATLVRLLRPHP GT:EXON 1|1-205:0| BL:SWS:NREP 1 BL:SWS:REP 12->60|BETI_PSEMY|5e-06|42.9|49/196| SEG 68->81|llaeelrsaraaae| SEG 123->137|aaaagdaafgvlaea| BL:PDB:NREP 1 BL:PDB:REP 12->60|2q24B|5e-08|52.1|48/172| RP:PDB:NREP 1 RP:PDB:REP 12->201|2dtzD|4e-15|10.7|178/184| RP:PFM:NREP 1 RP:PFM:REP 15->61|PF00440|5e-06|46.8|47/47|TetR_N| HM:PFM:NREP 2 HM:PFM:REP 15->61|PF00440|5.8e-16|48.9|47/47|TetR_N| HM:PFM:REP 134->158|PF08714|0.00019|44.0|25/160|Fae| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 2 RP:SCP:REP 12->64|1jt0A1|8e-12|24.5|53/71|a.4.1.9| RP:SCP:REP 86->202|1zk8A2|6e-09|21.8|101/105|a.121.1.1| HM:SCP:REP 5->81|2gfnA1|9.2e-15|33.8|77/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 82->202|1zk8A2|2.3e-22|41.9|105/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 159 OP:NHOMOORG 116 OP:PATTERN -------------------------------------------------------------------- 11--1---------111----2--21-----212121231-1---1-1----1--------1--31-311--------------------------------------1-----------------------------------1-1--1-------------------1-------------1-----------------------------------------------------------------------------------------------------------------------------1----------------1-------------------------------------------------2223-----1-34211112111------------2222212--12----1---121--12---221----2111111111111111----------------------------------3-1-----1-11----------1-------1-1--12------------1----1--------------------1------1--------------------12--------------------------------1-11-1------------------------------------1----------------------------------------------------------------------------------------------11-1--------------------------------1--------1-1--------------------------1---------------32----------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 205 STR:RPRED 100.0 SQ:SECSTR HHHHTccHHHHHHHHHHHHHHHHHHTcTTTccHHHHHHHHTccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHccccGGGHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHHHHHccccHHTcccHHHHHHHHHHHHHHHHHHHHHHHGGGc DISOP:02AL 1-10, 204-205| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccc //