[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57541.1
DDBJ      :             putative pyruvate carboxylase
Swiss-Prot:             

Homologs  Archaea  52/68 : Bacteria  859/915 : Eukaryota  194/199 : Viruses  0/175   --->[See Alignment]
b.84.1b.84.2c.14.1c.30.1d.126.1d.142.1
:1088 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->396 2gpwD PDBj 2e-57 36.9 %
:BLT:PDB   579->1066 1on9E PDBj 2e-45 31.4 %
:RPS:PDB   10->449 1dv2A PDBj 5e-46 31.4 %
:RPS:PDB   576->972 3buzA PDBj 6e-38 4.7 %
:RPS:SCOP  14->122 1h70A  d.126.1.3 * 3e-05 3.9 %
:RPS:SCOP  160->327 1w93A3  d.142.1.2 * 7e-39 35.4 %
:RPS:SCOP  335->449 1bncA1  b.84.2.1 * 2e-17 27.7 %
:RPS:SCOP  571->827 1on3A1  c.14.1.4 * 5e-38 24.6 %
:RPS:SCOP  837->1067 1on3A2  c.14.1.4 * 2e-49 36.6 %
:HMM:SCOP  7->121 1ulzA2 c.30.1.1 * 1.8e-34 50.0 %
:HMM:SCOP  89->330 1w96A3 d.142.1.2 * 9.5e-57 40.8 %
:HMM:SCOP  335->452 1dv1A1 b.84.2.1 * 6.5e-30 43.5 %
:HMM:SCOP  472->554 1o78A_ b.84.1.1 * 5.3e-09 33.7 %
:HMM:SCOP  569->827 1od2A2 c.14.1.4 * 8.8e-51 32.6 %
:HMM:SCOP  828->1069 1od2A2 c.14.1.4 * 1.2e-63 37.3 %
:RPS:PFM   160->324 PF02786 * CPSase_L_D2 3e-28 44.8 %
:RPS:PFM   340->447 PF02785 * Biotin_carb_C 5e-08 35.8 %
:RPS:PFM   604->1063 PF01039 * Carboxyl_trans 2e-53 38.0 %
:HMM:PFM   599->1066 PF01039 * Carboxyl_trans 5.7e-72 33.3 453/493  
:HMM:PFM   121->326 PF02786 * CPSase_L_D2 8.1e-58 39.8 206/211  
:HMM:PFM   10->115 PF00289 * CPSase_L_chain 2.8e-35 49.5 105/110  
:HMM:PFM   340->446 PF02785 * Biotin_carb_C 1.3e-28 43.8 105/107  
:HMM:PFM   493->529 PF00364 * Biotin_lipoyl 6.5e-06 37.8 37/74  
:BLT:SWISS 10->396 ACCC_ECOLI 3e-56 38.2 %
:BLT:SWISS 579->1066 12S_PROFR 7e-45 31.4 %
:PROS 289->296|PS00867|CPSASE_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57541.1 GT:GENE BAD57541.1 GT:PRODUCT putative pyruvate carboxylase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2859344..2862610 GB:FROM 2859344 GB:TO 2862610 GB:DIRECTION + GB:PRODUCT putative pyruvate carboxylase GB:PROTEIN_ID BAD57541.1 LENGTH 1088 SQ:AASEQ MIVGETGPMRVVVVNRGEIAVRIVRAARAHGYRTLVVHTPAEAATLPVRLADDAVELPREGAAAYLDIPAVVAAARTAGAGALVHPGYGFLSENAEFARACAAAGLVFVGPDPRVLATFGDKVAARAAAERAGVPVPPGTPVGADATAVAALLSEHPDGVMIKAAAGGGGRGMRAVRDPDELADAYAQCRAEANAAFGDDRVFAEALVDGARHIEIQVVADGVHARAVGDRDCSVQRRRQKLVEIAPAPELAETVREGLHRAAAALAESVGCRGVITVEFLVRGAEAWFLEVNPRLQVEHTVTEEVTGLDLVGIQFALARGRTLAELALPDTTPRGHAVQARVNAETVTAGGDVLPGSGIVTRFDAPTGAGVRVDTAVFAGLRHTVQFDSLLAKVIARADTHAAAVRRCADALAETVVVGVDTNVAVLRAILDALAEAGPVDTGWFERHVDGILAAAAELAPVVPPEAVPDGSGPDRTGPELGPDEQALATPMGATVVALADTGAVVAAGAEVAVLEAMKMQHMLRAERPLRVLRHLVAPGDVVDPHTALLVWAPAEHDGEDTERATVDLDAIRPDLAEVLERHRGVLDEARPDAVAKRHRLGRRTARRNIDDLVDAGSFVEYGALAVAAQRLRRSQEDLIANTPADGLIGGVATVNADRFGPDATRTVVLSYDYTVLAGTQGMRNHAKTDRMLELAHEQRLPVVFFTEGGGGRPGDTDYPGISGLDVTTFRAMGALSGRVPLIGIVSGRCFAGNAALLGMCDVVIATPDANIGMGGPAMIEGGGLGVFRPEDIGPIEVQRRNGVVHVVAADEAEAVDIARRYLAYFQGADKQWQAPDPRLARHVVPENRLRAFDIRAAIEAVVDVGSVLELRRDWGVGVVTALVRVEGKPYGLVANDCHHLGGAIDAPAADKLSAFLRLCDAHGLPIVALCDTPGFMVGPEAEKHATVTKFSRLFVDAANMRVPWGTIILRKGYGLGAQAMAAGSFRAPRFVVAWPTGEIGGMGLEGAVRLGFAKELAAIADPDERAEAFDALVAAAYANGKALTAATVLELDDVIDPADTRRWIGLLTGPERARGQRFIDNNVREH GT:EXON 1|1-1088:0| BL:SWS:NREP 2 BL:SWS:REP 10->396|ACCC_ECOLI|3e-56|38.2|382/449| BL:SWS:REP 579->1066|12S_PROFR|7e-45|31.4|468/611| PROS 289->296|PS00867|CPSASE_2|PDOC00676| SEG 19->29|iavrivraara| SEG 70->82|avvaaartagaga| SEG 95->104|aefaracaaa| SEG 123->143|vaaraaaeragvpvppgtpvg| SEG 164->175|aaaggggrgmra| SEG 403->414|aaavrrcadala| SEG 417->427|vvvgvdtnvav| SEG 454->470|laaaaelapvvppeavp| SEG 495->518|atvvaladtgavvaagaevavlea| SEG 773->787|igmggpamieggglg| SEG 805->820|vvhvvaadeaeavdia| BL:PDB:NREP 2 BL:PDB:REP 10->396|2gpwD|2e-57|36.9|377/447| BL:PDB:REP 579->1066|1on9E|2e-45|31.4|468/519| RP:PDB:NREP 2 RP:PDB:REP 10->449|1dv2A|5e-46|31.4|436/450| RP:PDB:REP 576->972|3buzA|6e-38|4.7|384/413| RP:PFM:NREP 3 RP:PFM:REP 160->324|PF02786|3e-28|44.8|163/207|CPSase_L_D2| RP:PFM:REP 340->447|PF02785|5e-08|35.8|106/107|Biotin_carb_C| RP:PFM:REP 604->1063|PF01039|2e-53|38.0|434/454|Carboxyl_trans| HM:PFM:NREP 5 HM:PFM:REP 599->1066|PF01039|5.7e-72|33.3|453/493|Carboxyl_trans| HM:PFM:REP 121->326|PF02786|8.1e-58|39.8|206/211|CPSase_L_D2| HM:PFM:REP 10->115|PF00289|2.8e-35|49.5|105/110|CPSase_L_chain| HM:PFM:REP 340->446|PF02785|1.3e-28|43.8|105/107|Biotin_carb_C| HM:PFM:REP 493->529|PF00364|6.5e-06|37.8|37/74|Biotin_lipoyl| GO:PFM:NREP 5 GO:PFM GO:0003824|"GO:catalytic activity"|PF02786|IPR005479| GO:PFM GO:0005524|"GO:ATP binding"|PF02786|IPR005479| GO:PFM GO:0008152|"GO:metabolic process"|PF02786|IPR005479| GO:PFM GO:0016874|"GO:ligase activity"|PF02785|IPR005482| GO:PFM GO:0016874|"GO:ligase activity"|PF01039|IPR000022| RP:SCP:NREP 5 RP:SCP:REP 14->122|1h70A|3e-05|3.9|102/255|d.126.1.3| RP:SCP:REP 160->327|1w93A3|7e-39|35.4|164/267|d.142.1.2| RP:SCP:REP 335->449|1bncA1|2e-17|27.7|112/116|b.84.2.1| RP:SCP:REP 571->827|1on3A1|5e-38|24.6|244/253|c.14.1.4| RP:SCP:REP 837->1067|1on3A2|2e-49|36.6|227/264|c.14.1.4| HM:SCP:REP 7->121|1ulzA2|1.8e-34|50.0|114/0|c.30.1.1|1/1|PreATP-grasp domain| HM:SCP:REP 89->330|1w96A3|9.5e-57|40.8|228/0|d.142.1.2|1/1|Glutathione synthetase ATP-binding domain-like| HM:SCP:REP 335->452|1dv1A1|6.5e-30|43.5|115/0|b.84.2.1|1/1|Rudiment single hybrid motif| HM:SCP:REP 472->554|1o78A_|5.3e-09|33.7|83/0|b.84.1.1|1/1|Single hybrid motif| HM:SCP:REP 569->827|1od2A2|8.8e-51|32.6|233/389|c.14.1.4|1/2|ClpP/crotonase| HM:SCP:REP 828->1069|1od2A2|1.2e-63|37.3|241/389|c.14.1.4|2/2|ClpP/crotonase| OP:NHOMO 4277 OP:NHOMOORG 1105 OP:PATTERN --2-2222222222222------253342-35111111111111111111111-1111111-----22 4686I567555644CBB99-9D44BE999999DEDEBBJI3C89444434438576653389A389B9A872333222-222733232555514111--22225442444111111111111111122331222516779822252111211111111111111112111111111111111133433112355444444444444444555555444565652222222262333333333333333333332-112212-1-3311221221212221111-11111111111111111111111111111111111111113223222222222232222111121-142-2111213212321121111422B7781111147A89551A9B8A66666655567-446446436781A88A86898B6666766667666667A32333333522226882222222222--2222222222222222216855149746444554444444445666615557ADB83366455757A6999F11622237211111112227564A141432222222144456462467668732221232222221211111111311-113333523363143333333333353333441-12133------12341121111111111-1111111111111111111121334221111111111111111211111111111111111111111133333355551662211111111111111177777424344388884878944444767111111111211111111124122334333333311111131442233--------1-1-------------------------1111111111131 1111556-C53-6685677877577786666554447656666777644656A65554444463333323435335525532333322-67566444553547CBA-7769696C874656671BC5F6b*D-F8G55367578654544C5497865B7HR6C663G65AEAE86463Y33376724A6578996678 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 965 STR:RPRED 88.7 SQ:SECSTR EEEccccccEEEEcccHHHHHHHHHHHHHHTcEEEEEEETTcTTcHHHHHccEEEEEEcccGGGTTTcHHHHHHHHHHHTccEEEccccccTTcHHHHHHHHHTTcEEccccHHHHHHHHcHHHHHHHHHHHTccccccccccccHHHHHHHHHHHcccEEEEEccccccccEEEEccHHHHHHHHHHHHHHHHHHTccccEEEEEcccccEEEEEEEEEEcccEEEEEEEEEEEEETTEEEEEEEccTTccHHHHHHHHHHHHHHHHHHTcEEEEEEEEEEETTEEEEEEEEccccTTHHHHHHHHcccHHHHHHHHHTTcccccccGGGcccccEEEEEEEEcccTEGTTTcccccEEccEEEccccTTEEEEEcccTTcEEccccccEEEEEEEEEccHHHHHHHHHHHHHHcEEEcccccHHHHHHHHcHHHHHccccTTHHHHHGGGG##################################################################################################################ccTTcHHHccccccccTTcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHTHHHHHHHHHcGGHHHHHTcHHHHHHHHHHHHHHcccccccEEE#TEEEEEEEcGGGGTcccccccTTcccccHHHHHHHHHHccEEEEEcccEEEEEEEEEEccccccTTccccccEEEEEEEcTTcccEEEEETTEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEcccccTTcHHHHHHHHcTTTHHHHTTTTccccTTTTHHHHTTcccTTTHHHHHHHHHHHTTccccccEEEEEEEccGGGTcccccGGGcTTcHHHHHHHHHHHTTcEEEEcccEEEEccccccGGGTTccHEEEEEEEcTTccEEEGGGccccccccEEEEcccEEEEEEEEETTEEEEEEEEEEEEHHHHHHTTcGGGGTccEEEEcTTcEEEcccHHHHHHHHTTTTTTGGGHTccccTTccTTHHHHHHHTTTcccHHHHHHcEEccGGGHHHHHHTTTcccccccccc######## DISOP:02AL 474-485, 553-571, 586-598, 1019-1027, 1074-1088| PSIPRED cEEcccccEEEEEEEcHHHHHHHHHHHHHcccEEEEEEccHHHccHHHHHccEEEEcccccHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHcccEEEcccHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHHHHccccEEEEEccccccccEEEEccHHHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEEcccEEEEEEEEccccEEcccEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccEEEEEEccccEEEEEEEEEEEcccHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccccccccEEEEccccccccEEEEEEcccccccccccccEEEEEEEEccHHHHHHHHHHHHHccEEEcccccHHHHHHHcccHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHccccccccccEEEEEcccEEEEEEccccEEEcccEEEEEEccccccEEEccccEEEEEEEEcccccccccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHccccccccccccccccEEEEEEEEEEcccccccccEEEEEEccccEEEEEEcHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHcEEEEEEEccEEEEEcHHHHHHHHccEEcccccccHHHHccccEEEEEEccHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccccHHHHHHHHHccccEEEEccccccEEEEEEEEEccEEEEEEEccccccccEEcHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccEEEEEcccccccEEEEEcccccEEcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccc //