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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57542.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  48/68 : Bacteria  847/915 : Eukaryota  191/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:295 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->231 1gegE PDBj 1e-25 30.8 %
:RPS:PDB   6->270 1a27A PDBj 3e-36 22.5 %
:RPS:SCOP  6->270 1a27A  c.2.1.2 * 1e-36 22.5 %
:HMM:SCOP  1->251 1zemA1 c.2.1.2 * 4.3e-60 34.7 %
:RPS:PFM   10->171 PF00106 * adh_short 1e-26 45.0 %
:HMM:PFM   7->174 PF00106 * adh_short 1.4e-36 34.0 162/167  
:BLT:SWISS 11->239 EPHD_MYCTU 2e-26 34.2 %
:PROS 144->172|PS00061|ADH_SHORT

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57542.1 GT:GENE BAD57542.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2862620..2863507 GB:FROM 2862620 GB:TO 2863507 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57542.1 LENGTH 295 SQ:AASEQ MTKFDGKSCLITGAASGLGRSTAQAVAAKGASLVLTDIDGPGLERTAAELRDGGATVHLAEALDVSDHDAVVALAEQTHARLGSVDIVMNVAGIATWGTVDRLTHRQWRRTVDIDLMGPIHVIEEFLPPMIAAGRGGHLVNVASAAGLFGLPWHAPYSAGKFGLRGVSEVLRFDLRRHRIGVSLVCPGAMRTPMVNRVEIAGVDREAEAVQKGMKLFLRHAVTPEAAAASIVRGVERNRYLVYTSHDIRVGHWAQRYFPPAYTLAMRGLNWAMQHYVDKPGVLRESGRERDAPLP GT:EXON 1|1-295:0| BL:SWS:NREP 1 BL:SWS:REP 11->239|EPHD_MYCTU|2e-26|34.2|228/592| PROS 144->172|PS00061|ADH_SHORT|PDOC00060| BL:PDB:NREP 1 BL:PDB:REP 7->231|1gegE|1e-25|30.8|224/256| RP:PDB:NREP 1 RP:PDB:REP 6->270|1a27A|3e-36|22.5|262/285| RP:PFM:NREP 1 RP:PFM:REP 10->171|PF00106|1e-26|45.0|160/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 7->174|PF00106|1.4e-36|34.0|162/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 6->270|1a27A|1e-36|22.5|262/285|c.2.1.2| HM:SCP:REP 1->251|1zemA1|4.3e-60|34.7|248/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 13890 OP:NHOMOORG 1086 OP:PATTERN 111-12466464543416-3121-B4484659-1---------21143--722-12--1-21533-34 FHQ2b41566B897s*xSR-S*66j*SRSSSb****m***5gE*KGE84G82NGD53A--IHP2LIWYTKC-222--12286U11211456514231--85O3A9*AZ8E111111111111113766AD865B65DFFHH222IAFBGI8776633121454353CJDY8212122212112JC878661C8GCCCCCFCEDEDCFFCHAIIBICDE8ECLHE7666674EZ6444443333444336676761B1991611-AE5557755599887545545433333333333333464465666666633333233355355A444444424263552463532-14821164122225332226433A2CdEES12222LCqce468RMONIGGIFFEHGIHR-ILLKGWHPRgc1uXXSlekzykljLYGPFKISKCGKGDL99999999LNO959B82222222211----22----11--111118GiwD6EUOGU*fikrtIOOPLXXrkRQRRCM*W*Ryka38MLQJCGGHPIUKgSABA485AB6113222223ANI78N7F41121-333327794C33537A98NY24-3211---1--21--1--113121354CBA7HCDAFB67987A6CBB897A6C886C1-2445811----CAGJ7H6AAA9A99999-AAAAA79AABA8AA9AA9CHOKHB77AA78A9AAAAA9898A9P78777673189999999999811174644489993JKLG222625211113352KKKML9H7CBL7LMIJGLQaNMHSLIONM6232232222545H777778979AAGFGIFE66742222242EE9899--------1-3----2-1-2--------2-------45331454642C1 11--YND-1-1-5AFQPMMTOYPcTaZCDACABBE7DLGJEJJCEBRMRZSdopMSPGFFDE86853435339672221337779844-MhDPAVC787784CKF7-DI6*coUWaIA8D7GQ9bUAYCe*S-MLQEEE9MBGTNAGD89Q27NGSNYkdlUCkXLIKNWWGUjX4A63f1237LELSjKRF58MDFC7 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 288 STR:RPRED 97.6 SQ:SECSTR GGGcTcEEEEEcccccHHHHHHHHHHHTcTTccEEEEEEEccGGGTHHHHHHccTTcEEEEEccTTcHHHHHHHHHTcTTccccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTcEEEEEEEEEGGGTcccTTcHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEccccccTTTTccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEcccTTHHHHHTTTccTTcHHHHHHHHHcEEEEEEEcGGGccEEEc####### DISOP:02AL 272-291| PSIPRED cccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccc //