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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57558.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  903/915 : Eukaryota  20/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13b.52.2
:261 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   34->261 3dxjF PDBj 3e-16 31.9 %
:RPS:PDB   36->257 3dxjF PDBj 4e-25 24.3 %
:RPS:SCOP  35->149 1aw8.1  b.52.2.1 * 5e-21 13.4 %
:RPS:SCOP  204->257 1ku3A  a.4.13.2 * 5e-11 27.8 %
:HMM:SCOP  10->109 1iw7F3 a.177.1.1 * 3.2e-25 28.0 %
:HMM:SCOP  112->191 1rp3A1 a.4.13.1 * 1.3e-14 40.3 %
:HMM:SCOP  169->260 1iw7F2 a.4.13.2 * 9e-16 33.7 %
:RPS:PFM   39->87 PF04542 * Sigma70_r2 2e-09 51.0 %
:RPS:PFM   129->193 PF04539 * Sigma70_r3 6e-04 44.4 %
:RPS:PFM   202->240 PF08281 * Sigma70_r4_2 3e-06 46.2 %
:HMM:PFM   208->256 PF04545 * Sigma70_r4 1.8e-21 46.9 49/50  
:HMM:PFM   40->108 PF04542 * Sigma70_r2 2.5e-18 36.2 69/71  
:HMM:PFM   123->181 PF04539 * Sigma70_r3 4.6e-14 39.0 59/78  
:BLT:SWISS 6->255 RPOF_STRCO 5e-47 39.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57558.1 GT:GENE BAD57558.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2875827..2876612 GB:FROM 2875827 GB:TO 2876612 GB:DIRECTION + GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD57558.1 LENGTH 261 SQ:AASEQ MAAESRSAGDSYDNIEPLFEKIAALDPGDPRRTALRAEVIDRALPLAEHIARRFAGRGESFDDLLQVARLGLVQAADRFDVGRGSSFLAFAVPTIMGEVRRHFRDNTWAVRVPRRTKEIQGSIGATVEELSQRLGRMPRAREIAAELGIDVVEVTQALIAGNAYQSSSLDSTAGDDGENTPLPLSESLGAEEPSFEFVDDYLAVRPLIAELPERERQVLVMRFFEGKTQTQIADVLGVSQMHVSRILSKTLHALREQALRD GT:EXON 1|1-261:0| BL:SWS:NREP 1 BL:SWS:REP 6->255|RPOF_STRCO|5e-47|39.7|247/287| BL:PDB:NREP 1 BL:PDB:REP 34->261|3dxjF|3e-16|31.9|213/349| RP:PDB:NREP 1 RP:PDB:REP 36->257|3dxjF|4e-25|24.3|222/349| RP:PFM:NREP 3 RP:PFM:REP 39->87|PF04542|2e-09|51.0|49/70|Sigma70_r2| RP:PFM:REP 129->193|PF04539|6e-04|44.4|63/78|Sigma70_r3| RP:PFM:REP 202->240|PF08281|3e-06|46.2|39/54|Sigma70_r4_2| HM:PFM:NREP 3 HM:PFM:REP 208->256|PF04545|1.8e-21|46.9|49/50|Sigma70_r4| HM:PFM:REP 40->108|PF04542|2.5e-18|36.2|69/71|Sigma70_r2| HM:PFM:REP 123->181|PF04539|4.6e-14|39.0|59/78|Sigma70_r3| GO:PFM:NREP 15 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF04539|IPR007624| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04539|IPR007624| GO:PFM GO:0006352|"GO:transcription initiation"|PF04539|IPR007624| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04539|IPR007624| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04539|IPR007624| GO:PFM GO:0003677|"GO:DNA binding"|PF08281|IPR013249| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08281|IPR013249| GO:PFM GO:0006352|"GO:transcription initiation"|PF08281|IPR013249| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08281|IPR013249| GO:PFM GO:0016987|"GO:sigma factor activity"|PF08281|IPR013249| RP:SCP:NREP 2 RP:SCP:REP 35->149|1aw8.1|5e-21|13.4|112/115|b.52.2.1| RP:SCP:REP 204->257|1ku3A|5e-11|27.8|54/61|a.4.13.2| HM:SCP:REP 10->109|1iw7F3|3.2e-25|28.0|100/184|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 112->191|1rp3A1|1.3e-14|40.3|77/0|a.4.13.1|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 169->260|1iw7F2|9e-16|33.7|92/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 2324 OP:NHOMOORG 923 OP:PATTERN -------------------------------------------------------------------- 2244722222222234433-362233333333455574654334511233322421111144B2855DDC61111111211282244411111111-11-11112111232222222222222211-1111111114555611155L8A67745588676797565789A758545558545532-11222345444444443444444555555444455543322222275222222222222222222221112112111111111111111111111111111111111111111111111111111111111111111555344444444343544433335552244444445454454444552-1325111111111111111121111111111111111-11112111111111111111111111111222222211211111111111111211111111111111111111111111111111221212122444454233433333333424435444211333242222113224324232322222222334133221132121221121334333333111113231111111111111111111121111334523433443234333435333443544431-1544311111143444343332333333-333332323333323322333344433344444444444444443132133323434443434431121222223333124331111111111111111111112112333333333433333333312222222223444444444333333222222221111112422222222222221221111-1-1111111111-111111112131112111231 -------1------------------------------------------------------------------------------------------------------------------------------------------------------1----------------2112B111124466-3--31---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 244 STR:RPRED 93.5 SQ:SECSTR #################ccccccccccccHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHHHHHHHHcccHHHHHHHHHHTTTTccTTcHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHG DISOP:02AL 1-18, 258-261| PSIPRED ccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccEEccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc //