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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57568.1
DDBJ      :             putative ribosomal RNA adenine N-6-methyltransferase
Swiss-Prot:             

Homologs  Archaea  11/68 : Bacteria  245/915 : Eukaryota  42/199 : Viruses  0/175   --->[See Alignment]
c.66.1
:269 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   20->181 2h1rB PDBj 8e-11 28.8 %
:RPS:PDB   27->122 1aqjA PDBj 4e-07 16.7 %
:RPS:SCOP  19->183 1qamA  c.66.1.24 * 1e-31 21.6 %
:HMM:SCOP  13->268 1i4wA_ c.66.1.24 * 2.8e-47 28.5 %
:RPS:PFM   19->183 PF00398 * RrnaAD 7e-13 32.1 %
:HMM:PFM   13->261 PF00398 * RrnaAD 2.5e-69 34.1 249/262  
:BLT:SWISS 19->65 TFB1M_HARVE 8e-06 44.7 %
:BLT:SWISS 40->263 ERMS_STRFR 1e-46 54.5 %
:PROS 43->70|PS01131|RRNA_A_DIMETH
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57568.1 GT:GENE BAD57568.1 GT:PRODUCT putative ribosomal RNA adenine N-6-methyltransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2890168..2890977) GB:FROM 2890168 GB:TO 2890977 GB:DIRECTION - GB:PRODUCT putative ribosomal RNA adenine N-6-methyltransferase GB:PROTEIN_ID BAD57568.1 LENGTH 269 SQ:AASEQ MSRASSRAARAGARKRFSQNFLADADIARRIVRSAGVGAGDLVLEIGPGDGMLTAQLLGVAGRVLAYEIDARYAARLQARYAHDPRIHCYHKDFRDAPLPDEPFGVVANVPFGSTTDIVRWCLAARQLTSATLLTQREFARKHTGDYGRWSKLTVTHWPTTTMHLGARIDRRHFRPVPRVDGALLHLRRRPDPLLAGAAARDYRRLVELGFTGVGGSLAATLATAFPPRRVRAACAAAGIPAGTPVGLVAPERWFALFRALRPGAATAR GT:EXON 1|1-269:0| BL:SWS:NREP 2 BL:SWS:REP 19->65|TFB1M_HARVE|8e-06|44.7|47/343| BL:SWS:REP 40->263|ERMS_STRFR|1e-46|54.5|224/319| PROS 43->70|PS01131|RRNA_A_DIMETH|PDOC00871| SEG 2->18|srassraaragarkrfs| SEG 71->82|aryaarlqarya| SEG 184->195|llhlrrrpdpll| SEG 225->242|afpprrvraacaaagipa| BL:PDB:NREP 1 BL:PDB:REP 20->181|2h1rB|8e-11|28.8|160/275| RP:PDB:NREP 1 RP:PDB:REP 27->122|1aqjA|4e-07|16.7|96/381| RP:PFM:NREP 1 RP:PFM:REP 19->183|PF00398|7e-13|32.1|165/256|RrnaAD| HM:PFM:NREP 1 HM:PFM:REP 13->261|PF00398|2.5e-69|34.1|249/262|RrnaAD| GO:PFM:NREP 3 GO:PFM GO:0000154|"GO:rRNA modification"|PF00398|IPR001737| GO:PFM GO:0000179|"GO:rRNA (adenine-N6,N6-)-dimethyltransferase activity"|PF00398|IPR001737| GO:PFM GO:0008649|"GO:rRNA methyltransferase activity"|PF00398|IPR001737| RP:SCP:NREP 1 RP:SCP:REP 19->183|1qamA|1e-31|21.6|162/235|c.66.1.24| HM:SCP:REP 13->268|1i4wA_|2.8e-47|28.5|249/0|c.66.1.24|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 319 OP:NHOMOORG 298 OP:PATTERN --------------------------------------------11--1-11-1---11-1--1--1- --1-1------1-11--1--11----11111-1---1111-------2------------11---11121-1---------------------------------------------1------111-11111111111--111-1------111-----------1-------------------------1-11111111-1111112211-1111111-111111111-11-------------------1-11111111-111111111111-1-11111111111111---11-111111111211111111111111--1111111111111-111-111--1-111-1---1--11--1111------1-111-1-11-------------------------------------111------11------------------------1--11-----------------111-1-----------11--1-----------------------------------------------------------------------------1--------11-1111-1----------------------------------------1----------------------------1---------------------------------------------------------------------------------------------------------1--1---------------1-1111-----111111-1-11111-------------1------------------------------------------------1---1--1---------1---1---1--1111-111--- 11----1-31-1------------------------------------------1-------------------1--------------121-1--111-----------2--------------------------------------------------1-----1---11-1111181111111-1-321-11112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 165 STR:RPRED 61.3 SQ:SECSTR ##################ccccccHHHHHHHHTTccccTTcEEEEETcTTcHHHHHHHccccEEEEEEccTTccccTTEEEEEccTTTccccccEEEEEEcccccccHHHHHHHHcTTccTTHHHHHcEEEEEEEHHHHTEEEEEcTTccEEEEEEEEGGGGTcGGGHHHHHHHHHHcEEHEE###################################################################################### DISOP:02AL 1-10, 265-269| PSIPRED ccHHHHHHHccccccHHccEEcccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHccEEEEEEccHHHHHHHHHHccccccEEEEEccHHccccccccEEEEEcccccHHHHHHHHHHccccccEEEEEEEcHHHHHHccccccccHHHHHHHHHHcEEEEEEEccccccccccEEEEEEEEEEccccccccccHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccc //