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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57590.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  120/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:320 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->66 1j5yA PDBj 2e-04 47.6 %
:RPS:PDB   18->64 2acjC PDBj 1e-04 17.4 %
:RPS:PDB   192->271 1a5lC PDBj 4e-04 16.9 %
:RPS:SCOP  22->66 1j5yA1  a.4.5.1 * 3e-10 47.6 %
:HMM:SCOP  2->64 1biaA1 a.4.5.1 * 6.2e-10 31.7 %
:RPS:PFM   22->64 PF02082 * Rrf2 7e-04 47.6 %
:HMM:PFM   7->62 PF08279 * HTH_11 8.9e-18 50.0 54/55  
:HMM:PFM   290->317 PF07820 * TraC 0.0004 48.1 27/92  
:BLT:SWISS 141->297 PAFB_MYCLE 5e-09 33.1 %
:PROS 7->41|PS00894|HTH_DEOR_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57590.1 GT:GENE BAD57590.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2908210..2909172 GB:FROM 2908210 GB:TO 2909172 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57590.1 LENGTH 320 SQ:AASEQ MLETSARLLELLSLLQLGRDWTSSELADRLAVSTRTVRADIGKLRSLGYPVDARPGVAGGYRLAAGTAMPPLLLDDDEAVAVAVGLGAVATQRLGLEETSLTALAKLEQVLPARLRRRVQAVRESTSVVPGAVPPLDPSVLGAVAAATRRHERLRFRYTKPGGAEAARHIEPQRLVTWGPLWYLLAWDLDRCDWRVFRVDRMAPPTPTGARFQPRAIPADDVVEYVVGRVSKGTWKYRARVRVHAPAGTVTAKIPIPVDIEVIDESTCHIELGSDDPDGLALSMAQLGVDIEVIEGDELAVAFDRLAARFRRAAGGASTA GT:EXON 1|1-320:0| BL:SWS:NREP 1 BL:SWS:REP 141->297|PAFB_MYCLE|5e-09|33.1|151/331| PROS 7->41|PS00894|HTH_DEOR_1|PDOC00696| SEG 8->17|llellsllql| SEG 72->90|llldddeavavavglgava| SEG 299->317|lavafdrlaarfrraagga| BL:PDB:NREP 1 BL:PDB:REP 22->66|1j5yA|2e-04|47.6|42/167| RP:PDB:NREP 2 RP:PDB:REP 18->64|2acjC|1e-04|17.4|46/66| RP:PDB:REP 192->271|1a5lC|4e-04|16.9|65/536| RP:PFM:NREP 1 RP:PFM:REP 22->64|PF02082|7e-04|47.6|42/83|Rrf2| HM:PFM:NREP 2 HM:PFM:REP 7->62|PF08279|8.9e-18|50.0|54/55|HTH_11| HM:PFM:REP 290->317|PF07820|0.0004|48.1|27/92|TraC| RP:SCP:NREP 1 RP:SCP:REP 22->66|1j5yA1|3e-10|47.6|42/65|a.4.5.1| HM:SCP:REP 2->64|1biaA1|6.2e-10|31.7|63/0|a.4.5.1|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 165 OP:NHOMOORG 120 OP:PATTERN -------------------------------------------------------------------- -1--3----------------1---1------11114344-2-145-1--2------3--121-4153431----------------------------------1--------------------------------------2----------------------------------------1---------------1-1-----------11--------1------3----------------------------------------------------------------------------------------------------------------------------------------------1---------1------------111-1111111-1-----1-----1--------------11-1-----211---------------------------------------------------------------------1-------1--------111-------1-----------------------1----------------------1--1--121------------------------------------1----1111---111-11---11--------------------------------------------------111-----1-111-111-111111-------------------------------1211--1-1--------------------------1-1-----------------------------------1-111111111111--------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 131 STR:RPRED 40.9 SQ:SECSTR ccccHHHHHHHHHHTTcTccccHHHHHHHHTccHHHHHHHHHHHHHTTccEEEEcccccEEEEcTT#############################################################################################################################cEEEEcGGGcHHHHHHHcEEEEcHHHHHTTHHH###########HHTcccEEEEcccccc####ccGGGcTTccccccEE################################################# DISOP:02AL 1-2, 315-320| PSIPRED cccHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEcccEEEEEEccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEEEEEEEEccEEEEEEEEcccccEEEEEEEcEEEEEEcccccccccccHHHHHHHHHHHHcccccccEEEEEEEccHHHHHHHccccccEEEEcccEEEEEEEcccHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHcccccc //