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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57592.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  76/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:186 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->109 3c2bB PDBj 6e-07 36.7 %
:RPS:PDB   7->182 3bt9B PDBj 3e-13 13.7 %
:RPS:SCOP  7->59 1jt0A1  a.4.1.9 * 3e-10 18.9 %
:HMM:SCOP  4->75 1zk8A1 a.4.1.9 * 2.2e-13 31.9 %
:RPS:PFM   12->57 PF00440 * TetR_N 2e-04 45.7 %
:HMM:PFM   12->57 PF00440 * TetR_N 1.8e-13 41.3 46/47  
:HMM:PFM   53->85 PF10796 * Anti-adapt_IraP 0.00068 27.3 33/87  
:BLT:SWISS 9->89 YWCC_BACSU 2e-07 30.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57592.1 GT:GENE BAD57592.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2909945..2910505) GB:FROM 2909945 GB:TO 2910505 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57592.1 LENGTH 186 SQ:AASEQ MGALRTRREAWVDAGLSALATGGVDAVRVEALAKALGVTKGGFYGHFADRDALLTAMLDTWEREAVDNVVEQIEHAEGSVLDKARLAGHLTFSGDRLLPIDLAVRDWARRDPAVAERLRRVDNRRMDLLRAAIGTVCSDPDEIEARSLLAFCAAIGRHFLAADHPGRTREEVLARAGDLILKRSPE GT:EXON 1|1-186:0| BL:SWS:NREP 1 BL:SWS:REP 9->89|YWCC_BACSU|2e-07|30.9|81/223| BL:PDB:NREP 1 BL:PDB:REP 7->109|3c2bB|6e-07|36.7|98/192| RP:PDB:NREP 1 RP:PDB:REP 7->182|3bt9B|3e-13|13.7|175/186| RP:PFM:NREP 1 RP:PFM:REP 12->57|PF00440|2e-04|45.7|46/47|TetR_N| HM:PFM:NREP 2 HM:PFM:REP 12->57|PF00440|1.8e-13|41.3|46/47|TetR_N| HM:PFM:REP 53->85|PF10796|0.00068|27.3|33/87|Anti-adapt_IraP| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 7->59|1jt0A1|3e-10|18.9|53/71|a.4.1.9| HM:SCP:REP 4->75|1zk8A1|2.2e-13|31.9|72/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 92 OP:NHOMOORG 76 OP:PATTERN -------------------------------------------------------------------- --------------111----3--11-----122221311--------------------------1-----------------------------------------------------------------------------1-1--------------------11--------------1---------------------------------1---1---------1---------------------------------------------------------------------------------------------------------------------------------------------------------1-111-----11------------------1---1--111-11111112------31----223---------------1--------------------------------1----------------------------1--------11--------------1----------------112----------1-------------11---1---------------------------------------------------------1----------------------------------------------------------------------------------------------------------------1---------------------------1------1---1-------------------------------1111111111--------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 183 STR:RPRED 98.4 SQ:SECSTR ccHccHcHHHHHHHHHHHHHHcccccccHHHHHHHHTccTTcTTcccccHHHHHHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHcGGGHHHHHHHHTcccccccTTTTHHHHHHHHHHHHHHHHHHTccccccHHHHHHHHHHHHHHHHHTTTTccHHHHHHHHHHHHHHHHHT### DISOP:02AL 1-4, 184-186| PSIPRED cccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccc //