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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57602.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  553/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.35.1c.93.1
:346 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->319 1bdhA PDBj 6e-28 31.9 %
:RPS:PDB   6->340 1bdhA PDBj 9e-45 29.1 %
:RPS:SCOP  6->59 1bdhA1  a.35.1.5 * 1e-11 45.3 %
:RPS:SCOP  65->341 1rzrA2  c.93.1.1 * 8e-39 20.5 %
:HMM:SCOP  1->63 2bjcA1 a.35.1.5 * 2.4e-14 54.8 %
:HMM:SCOP  63->340 1dbqA_ c.93.1.1 * 3.8e-53 37.2 %
:RPS:PFM   6->51 PF00356 * LacI 2e-06 64.4 %
:RPS:PFM   65->302 PF00532 * Peripla_BP_1 6e-25 38.1 %
:HMM:PFM   64->289 PF00532 * Peripla_BP_1 3.7e-19 27.9 208/279  
:HMM:PFM   6->51 PF00356 * LacI 2.3e-17 62.2 45/46  
:BLT:SWISS 4->345 GALS_ECOLI 7e-36 33.6 %
:PROS 6->24|PS00356|HTH_LACI_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57602.1 GT:GENE BAD57602.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2917945..2918985 GB:FROM 2917945 GB:TO 2918985 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57602.1 LENGTH 346 SQ:AASEQ MAAVRLQDVAARAGVSLATASRVLNGSSRVPGEGVADRVRAAAAELGYVPNAQAQALARASTGLIGLVVHDIADPYFSSIVQGVQAAARRAGKLVLLASTQRDFDIERESVSTFISHRADAIILAGSRQSGDLDRDLEKECARYLDNNGKVVVIGQPLSFGAAVEPENHAASAELARALLGQGHRDFAVIGGPAHIRTAVDRRNGFVEALACQGVTPLVEIAGDFSRDGGFSAARRLAAALDLRPGQTGAAAPCVFAVSDVMAIGAIAAWRELGLSVPDDVCVAGFDDIPTLRDHVPGLSTVALSLVEIGERAVALALDESATAERVHEFVPGRVILRDSSVSRRS GT:EXON 1|1-346:0| BL:SWS:NREP 1 BL:SWS:REP 4->345|GALS_ECOLI|7e-36|33.6|324/346| PROS 6->24|PS00356|HTH_LACI_1|PDOC00366| TM:NTM 1 TM:REGION 249->271| SEG 233->244|aarrlaaaldlr| BL:PDB:NREP 1 BL:PDB:REP 6->319|1bdhA|6e-28|31.9|301/338| RP:PDB:NREP 1 RP:PDB:REP 6->340|1bdhA|9e-45|29.1|320/338| RP:PFM:NREP 2 RP:PFM:REP 6->51|PF00356|2e-06|64.4|45/46|LacI| RP:PFM:REP 65->302|PF00532|6e-25|38.1|223/261|Peripla_BP_1| HM:PFM:NREP 2 HM:PFM:REP 64->289|PF00532|3.7e-19|27.9|208/279|Peripla_BP_1| HM:PFM:REP 6->51|PF00356|2.3e-17|62.2|45/46|LacI| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00356|IPR000843| GO:PFM GO:0005622|"GO:intracellular"|PF00356|IPR000843| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00356|IPR000843| RP:SCP:NREP 2 RP:SCP:REP 6->59|1bdhA1|1e-11|45.3|53/56|a.35.1.5| RP:SCP:REP 65->341|1rzrA2|8e-39|20.5|264/272|c.93.1.1| HM:SCP:REP 1->63|2bjcA1|2.4e-14|54.8|62/0|a.35.1.5|1/1|lambda repressor-like DNA-binding domains| HM:SCP:REP 63->340|1dbqA_|3.8e-53|37.2|261/282|c.93.1.1|1/1|Periplasmic binding protein-like I| OP:NHOMO 3945 OP:NHOMOORG 557 OP:PATTERN -------------------------------------------------------------------- 7673e-1355A----------1---A------2---23AE7-2AHbO1EEB3SRP-15--6477O5LORH5B999FFE3---4-----1111-1-----1-6-419-649--------------------------66644---9----------------------1-1-------------36-11AA-A798887876A6887767CC668688667B27477888883K53333333333333341155738-761A1-1995555533663434777676742254454345554554444555555553422255567416C222222262624114668D4221226--------G1-499881-11-1CAA3-----3-443--------4434344434A---3--3115E--PEFDRLLXXSLG657127975445855--------333-1--1------------------------------28261244148ABDA86333377CH54543798A3552--5569151144824E----1--2----------------1----1--3------------------7-----------------------------BCE5-75-8385454632322312233115-------------HHFE7FCCBBCCDDDBB-BB9BEBBBDDBCBDEADEBJMJHF777BCAABBBBBBAABA9AN999AAAC7-HDDDCDDDDDDD---------------77B444746133333334----------7644443658233351555----------99AAAAAAADB8EE87998997761111---1----------------5-------------------------4455-39554-1- -------------1------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------1--------4---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 346 STR:RPRED 100.0 SQ:SECSTR TTcccHHHHHHHHTccHHHHHHHHHTccccccHHHHHHHHHHHHHHTccccHHHHHHHHTcccEEEEEEcccccHHHHHHHHHHHHHHHHTTcEEEEEEcTTcHHHHHHHHHHHHHTTccEEEEcccccHHHHcccHHHHHHHHTTTTccEEEccccccccEEEEccHHHHHHHHHHHHHHTTcccEEEEcccTTcHHHHHHHHHHHHHHHHTTccccGGccccccHHHHHHHHHHHHcTHHHHHHcccccccEEEEccHHHHHHHHHHHHHTTccTTTTcEEEEEEccTTGGGccccccEEEccHHHHHHHHHHHHHHHTccccccEEEcccEEEccccccccTT DISOP:02AL 1-2, 54-58, 341-346| PSIPRED cccccHHHHHHHHcccHHHEEEEEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHcccEEEcccEEEEEccccccccEEEEcHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHccccEEEEEccHHHHHHHHHHHHHHHcccccccEEEEccEEEEEcccccccc //