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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57603.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  24/68 : Bacteria  572/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:290 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   150->208 3d31C PDBj 2e-05 37.3 %
:RPS:PDB   172->211 3dhwA PDBj 4e-10 27.5 %
:RPS:SCOP  77->276 2r6gG1  f.58.1.1 * 4e-11 13.0 %
:RPS:PFM   117->275 PF00528 * BPD_transp_1 1e-07 25.8 %
:HMM:PFM   106->268 PF00528 * BPD_transp_1 3.3e-30 28.6 161/185  
:BLT:SWISS 63->267 Y355_HAEIN 7e-29 30.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57603.1 GT:GENE BAD57603.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2919112..2919984 GB:FROM 2919112 GB:TO 2919984 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD57603.1 LENGTH 290 SQ:AASEQ MAVVTSVEAGSSAPKATQPVRPRRRKLPPLSSLWSTVWRPLALVAALVVAWWVVTEFELVEPYILPSPAETWRTTVDNSAYLLENTWVTTYETVVGFVIAALIGEAVALVMIYSRSVERTMYPLILFAQVIPKIAIAPLFIVWLGFGTSPKILVAVLMAFFPIVISGMAGLRSVDPEILELTSTMGAGNWKTFVKVRFPASLPQLMSGLKIAATLAVTGAVVGEFVGANEGLGYVILQANGNIDTAMLFAALIIMSLLGIILFAIIEIAEQFLIPWHASRRSTASVVGGA GT:EXON 1|1-290:0| BL:SWS:NREP 1 BL:SWS:REP 63->267|Y355_HAEIN|7e-29|30.2|205/245| TM:NTM 5 TM:REGION 39->61| TM:REGION 84->106| TM:REGION 134->156| TM:REGION 206->228| TM:REGION 245->267| SEG 21->35|rprrrklpplsslws| SEG 41->54|lalvaalvvawwvv| SEG 212->223|aatlavtgavvg| BL:PDB:NREP 1 BL:PDB:REP 150->208|3d31C|2e-05|37.3|59/248| RP:PDB:NREP 1 RP:PDB:REP 172->211|3dhwA|4e-10|27.5|40/203| RP:PFM:NREP 1 RP:PFM:REP 117->275|PF00528|1e-07|25.8|159/195|BPD_transp_1| HM:PFM:NREP 1 HM:PFM:REP 106->268|PF00528|3.3e-30|28.6|161/185|BPD_transp_1| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| RP:SCP:NREP 1 RP:SCP:REP 77->276|2r6gG1|4e-11|13.0|200/284|f.58.1.1| OP:NHOMO 1965 OP:NHOMOORG 599 OP:PATTERN ----1----------------1-1--------11-21122222232---11111------1-----11 -1-131--113-1-433----1---B------23337AA4-916531--12-616131--11--4347243122211111-33-------11-111--------------1111111111111121---1-----133333---33213122224232-1--131-231111-----------1121----11344444455444444582442344321324211111114E322222222222222133111-11211-1-122--54--2-21---22211-1233222222222221111111111111222---22211134B1112332222257721113341-31---98162-23-52111-21--2211------55FGO146C24935555545454C-989769A96E1-QDDB97BCAAA9GA---96979AA544222222222-1-1213-----------------------------2--1-16FDB448887434442777944442487K8786-2553257227343HD13-161431-------11-1222371331-213--2126--2-3--212238141211----------------1------2111--1-2-2---------------------1-311------3263-222222222222-222222221222222222256544-11----------------41122122--244444424444--------------1-211-1----111-1--14553514--26565556565355353554----------1111-----222111-2--------------3-------------------------------------------12-11-121-12 -------------------------------------------------------------------------------------------------------------------------------------------------------------------2---------------------2--3---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 122 STR:RPRED 42.1 SQ:SECSTR ########################################################################################HHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHH#HcTTHHHHHHHHHHHHHHHHHHHHHHHHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHH############################################################################### DISOP:02AL 6-27, 276-290| PSIPRED ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccc //