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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57613.1
DDBJ      :             putative glycosyl hydrolase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  184/915 : Eukaryota  31/199 : Viruses  0/175   --->[See Alignment]
a.102.1b.30.5c.108.1
:1076 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->243 1z4nA PDBj 1e-08 28.3 %
:BLT:PDB   278->1007 1h54A PDBj 3e-31 23.8 %
:RPS:PDB   19->249 2ah5A PDBj 4e-10 14.2 %
:RPS:PDB   265->1074 2eaeA PDBj 7e-44 11.8 %
:RPS:SCOP  17->249 2hszA1  c.108.1.6 * 2e-16 20.7 %
:RPS:SCOP  278->534 1h54A2  b.30.5.3 * 2e-40 24.8 %
:RPS:SCOP  539->1047 1h54A1  a.102.1.4 * 3e-33 19.3 %
:HMM:SCOP  15->249 1te2A_ c.108.1.6 * 4.4e-36 33.5 %
:HMM:SCOP  269->535 1h54A2 b.30.5.3 * 8.2e-64 35.9 %
:HMM:SCOP  536->1049 1h54A1 a.102.1.4 * 2.1e-101 32.4 %
:RPS:PFM   294->534 PF03636 * Glyco_hydro_65N 2e-31 37.0 %
:RPS:PFM   589->1000 PF03632 * Glyco_hydro_65m 8e-61 40.1 %
:HMM:PFM   587->1000 PF03632 * Glyco_hydro_65m 2.6e-111 40.9 367/370  
:HMM:PFM   282->535 PF03636 * Glyco_hydro_65N 4.7e-47 28.9 246/255  
:HMM:PFM   19->215 PF00702 * Hydrolase 1.7e-19 30.7 179/192  
:HMM:PFM   1004->1049 PF03633 * Glyco_hydro_65C 3.4e-07 31.1 45/54  
:BLT:SWISS 62->238,278->1064 Y2006_MYCTU e-176 46.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57613.1 GT:GENE BAD57613.1 GT:PRODUCT putative glycosyl hydrolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2933121..2936351) GB:FROM 2933121 GB:TO 2936351 GB:DIRECTION - GB:PRODUCT putative glycosyl hydrolase GB:PROTEIN_ID BAD57613.1 LENGTH 1076 SQ:AASEQ MRLEHLPAPLGRTQNDFGAVVFDMDGVVTDTAAVHAAAWKTLFDEALGRVRGPDEPEFDIVEDYRRWVDGRSREDGVREFLSSRGITLPEGEPDDEPGALTVSGLSRRKQDLFTAELDRNGVRVFPDAAELLRRLRAAGVPTALVTASRNSAAVLAAAGLAELFTVRVDGTDAARLGLPGKPDPAMFLEAACRLDVAPIDAAVLEDATSGVRAAATGGFGLVVGVDRTGAASGLAEAGADVVVTDLADLPFAPPHGRPAPPVAPRWGGGATDGSPGGWNLIYDDFVPAQEGTREALCTTGNGYWASRGSYPGSTADTVHYPGTYLAGVYNRITSHLGGRDVETEHMVNAPDWTYLTVQPADGPVLLPGIPEMVAHHQDLNLRSGVLTTIDHYRHGQGRRTKVTTRRFHSMTDPHLAALEVTVVAENWSGQVVIESGVDGRVANRNVAADRPLDGRHLCPGAHHRPDEETLLYETVTRQSGVRIVTAIRTRTEATVRDRSPLADEQCPGDRFTLDIDSGTAVSIEKIAAVSTSRDRAVSTAALDAAHRIRNAPCLAPLLDAHVTAWARLWDRFGIRLDDGTTHRLALNLHIFHVLQTVAAGDPDLDAGVPARGLHGEAYRGHIFWDELFVYPMLTLRRPELTRAFLLYRYRRLRRACAAATAAGLDGALFPWQSGSDGRDETPAELLNTRNGQWMPDNSRRQHHVGLALAYSVWQYYQSTDDERFLFDHGAEIVIQVARLFAALATYDPADDRFDISGVMGPDEYHDGYPDTPGGGLRNNTYTNVLTAWVLARARDIVLLLDGRDCTPLRERLRLRPEEPARWDRISRRLRVPFHRDGIISQFEGYEDLAEFDWDAYRCEYGNIERLDLILQAEGDSTNRYKLSKQADVLMLFYLFSAEELRDIFERLGYALPPELIPRTVAYYLARTSHGSTLSRLAHAWVLARTDRTASWSLFEQALAADLADTQGGTTREGVHIGAMAGTADMVLRCYGGLETRRDTLRLHPVLPTELHEAEFTISYRGQPLTVTVTHTHVNLRLHASRAAPIRVVVENVERTIGPGQTWRVPLTTRRPTPALI GT:EXON 1|1-1076:0| BL:SWS:NREP 1 BL:SWS:REP 62->238,278->1064|Y2006_MYCTU|e-176|46.2|955/1327| SEG 27->41|vvtdtaavhaaawkt| SEG 128->138|aaellrrlraa| SEG 152->163|aavlaaaglael| SEG 250->264|pfapphgrpappvap| SEG 640->669|ltrafllyryrrlrracaaataagldgalf| SEG 807->819|plrerlrlrpeep| SEG 1025->1033|tvtvththv| BL:PDB:NREP 2 BL:PDB:REP 17->243|1z4nA|1e-08|28.3|198/219| BL:PDB:REP 278->1007|1h54A|3e-31|23.8|677/752| RP:PDB:NREP 2 RP:PDB:REP 19->249|2ah5A|4e-10|14.2|197/206| RP:PDB:REP 265->1074|2eaeA|7e-44|11.8|774/887| RP:PFM:NREP 2 RP:PFM:REP 294->534|PF03636|2e-31|37.0|230/252|Glyco_hydro_65N| RP:PFM:REP 589->1000|PF03632|8e-61|40.1|367/372|Glyco_hydro_65m| HM:PFM:NREP 4 HM:PFM:REP 587->1000|PF03632|2.6e-111|40.9|367/370|Glyco_hydro_65m| HM:PFM:REP 282->535|PF03636|4.7e-47|28.9|246/255|Glyco_hydro_65N| HM:PFM:REP 19->215|PF00702|1.7e-19|30.7|179/192|Hydrolase| HM:PFM:REP 1004->1049|PF03633|3.4e-07|31.1|45/54|Glyco_hydro_65C| GO:PFM:NREP 5 GO:PFM GO:0003824|"GO:catalytic activity"|PF03636|IPR005196| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF03636|IPR005196| GO:PFM GO:0030246|"GO:carbohydrate binding"|PF03636|IPR005196| GO:PFM GO:0003824|"GO:catalytic activity"|PF03632|IPR005195| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF03632|IPR005195| RP:SCP:NREP 3 RP:SCP:REP 17->249|2hszA1|2e-16|20.7|213/224|c.108.1.6| RP:SCP:REP 278->534|1h54A2|2e-40|24.8|250/267|b.30.5.3| RP:SCP:REP 539->1047|1h54A1|3e-33|19.3|466/485|a.102.1.4| HM:SCP:REP 15->249|1te2A_|4.4e-36|33.5|209/218|c.108.1.6|1/2|HAD-like| HM:SCP:REP 269->535|1h54A2|8.2e-64|35.9|259/268|b.30.5.3|1/1|Galactose mutarotase-like| HM:SCP:REP 536->1049|1h54A1|2.1e-101|32.4|469/0|a.102.1.4|1/1|Six-hairpin glycosidases| OP:NHOMO 370 OP:NHOMOORG 217 OP:PATTERN ----------------1---------------------------------------1----------- ----2--1---222-2233-33224233333133331232-2223222----14311---2222223-312-----------------11----------13-211-1-----------------221222222-2111----------1-----------------221----------------------1------------------11-1--------12211122----------------------112-11--111331111-1-32-223--------------------------------------------4--1-----------12----1-4---------------3---2223--------------------1-------------------5315221---------------------------------------------------------------------------------1-----------------------------1------------2----1------------111111-----------------------------------1-----------------------------------1--------1-------------1---1-2--------1---1-1111111111-11111-111111-11111--------1-1------------------1111-----------------------------------------------------------------------------------------------------------------------------------------------1-1-----1---11-----1--------2- ------1-----------------------------------------11-----------------------------------------------------------14-11-1------1111-1-591---4----1-1-1-1-------11111----32---15---4------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1059 STR:RPRED 98.4 SQ:SECSTR ##HHHHHHHHHcccccccEEEEcccTTTEEcHHHHHHHHHHHHHHHHHHHHHHTTcTcccccHHHHHHTcccHHHHHHTTccGGGHHHHHHHHHHHccccHHHHHHHHHHHHHHHHTGGGccEEcTTHHHHHHHHHTTccEEEEEEEEHHHHHHHHHTTcGGGccEEEEEcccGGGccccccHHHHHHHHHHHTTccGGGEEEEEccHHHHHHHHHTcEEEEEcEcccccHHHHHTTcccEEEccTTHH###############EEcccGGGccccccccTTcccHHHHHHHHHHcEEEEcccEEEEEcccTTcccccTTccccccTTccHHHHGGGccccccTTccccccHHHHccccccEEEEEccccccEEEEEEEETTTTEEEEEEEEEEEEccccEEEEEEEEETTTTTEEEEEEEEEEEccTTcEEEEEEccccTTccEEEEEEEEcccEEEEEEEETTTccEEEEEEEEEEGGGccEEEEcEEEEcTTcccEEEEEEcEEEEEEEEEEcEEEEEEcccccTTTccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHTTcEEEcccccTTcTTcHHHHHHHHHccTTccccccTTcTccccccccTTcccGGGGcETccTTTTTcGGGGHHHHHHHHHHHHHHHHHHHHHHccccccTTTccTTcccccccccEEcTTcccccHHHHccTTHHHHHHHHHHHHHHHHccHHHHEHHHHHHHHHHHHHHHHHTcEEcccTTTcccEEccEEEETTEEEEEEETTccccHHHHHHHHHHHHHHHHHHHHHTcTTccccccTTccGGGGcccTTcccccTTccccHHHHHHHHccccccTTccccccTTcccTTccTTccccTTccTTccccccGGGTTTTTcccccccccTTHHHHHHHHHHHHHHEETTEEETTEEccccHHHHHHHHHHHHHTTcHHHHHHHHHcccTTccccccccccTHHHHHHHHHHHHHHEEcccEEEEEETcEEEcTTccTTcccEEEEEEEETTTEEEEEEEETTEEEEEEcccccEEEEETTGGEEEEETTEEcccEEEEcTTccEE DISOP:02AL 3-4, 1074-1076| PSIPRED ccccccccccccccccccEEEEEccccEEccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccEEEEEEcccHHHHHHHHccccHHccEEEEcHHHHHccccccccHHHHHHHHHHHcccHHHEEEEEccHHHHHHHHHcccEEEEEEccccccccHHHccccEEEccHHHHHHHccccccccccccccccccccccccccEEEEccccHHHHHHHccHHHHcccEEEEEEcccccccccccccEEEEEEEEcccccccccccccccEEEcccccEEEEEEEccccEEcccccccEEEEEEEEEEccEEEEEEEEEcccccEEEEEEEEEEEEEcccEEEEEEEEEEcccEEEEEEEEccccEEEccccccccccccEEEEEcccccccccEEEEEEEEEcccEEEEEEEEEEEEccccccEEEEccccccEEEEEEEEcccEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHEEEccccccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHcccccccccccEEEcccccccccccHHHcccccccHHHcccccccccccccccEEEEcHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccEEEEccEEEEcccccccccEEEEEEEEccEEEEEEEEccEEEEEEEcccccEEEEEEccEEEEEEcccEEEEEEcccccccccc //