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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57618.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  56/68 : Bacteria  878/915 : Eukaryota  193/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:256 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->255 1vl8B PDBj 1e-34 34.4 %
:RPS:PDB   10->256 2ae1A PDBj 8e-44 30.6 %
:RPS:SCOP  16->252 1pwxA  c.2.1.2 * 3e-44 21.6 %
:HMM:SCOP  10->252 1zemA1 c.2.1.2 * 2.1e-84 43.6 %
:RPS:PFM   15->180 PF00106 * adh_short 2e-21 42.2 %
:HMM:PFM   16->181 PF00106 * adh_short 2.2e-34 30.9 162/167  
:BLT:SWISS 12->256 DHRS4_RABIT 4e-36 36.8 %
:PROS 150->178|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57618.1 GT:GENE BAD57618.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2940013..2940783 GB:FROM 2940013 GB:TO 2940783 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57618.1 LENGTH 256 SQ:AASEQ MDKDSFRKLFDLSGRTAIVTGGTRGIGLAIAEGFACAGANLVVASRKPEACEQAAARLRELGAQAVGVPTHLGEIDSLRALVDTAVSAFGGIDIVVNNAANALAQPLATMAPEAVDKSFGVNVQGPLFLVQAALPHLRASAHAAVLNLGSVAALQFAPGLSMYAAGKAALLSFTRAMAAEFAADGIRVNAMAPGAVNTDMVRKNPPEFIAAMAQAPLLRRIAEPDEMVGAALLLCSDAGSFITGQTFLVDGGTVAR GT:EXON 1|1-256:0| BL:SWS:NREP 1 BL:SWS:REP 12->256|DHRS4_RABIT|4e-36|36.8|242/260| PROS 150->178|PS00061|ADH_SHORT|PDOC00060| SEG 97->102|nnaana| BL:PDB:NREP 1 BL:PDB:REP 9->255|1vl8B|1e-34|34.4|247/252| RP:PDB:NREP 1 RP:PDB:REP 10->256|2ae1A|8e-44|30.6|245/252| RP:PFM:NREP 1 RP:PFM:REP 15->180|PF00106|2e-21|42.2|166/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 16->181|PF00106|2.2e-34|30.9|162/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 16->252|1pwxA|3e-44|21.6|231/252|c.2.1.2| HM:SCP:REP 10->252|1zemA1|2.1e-84|43.6|243/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 19178 OP:NHOMOORG 1127 OP:PATTERN 2221246AB9B9A99719243221E77A798E22---------21154--722-24122233853134 LOd4z31777F894u**YY-Y*44**YXYYYp****r***7*F*ZNGA4MG3WKOC5G11OMe6UOmmoXF111131222C7Z21333678729221--97Z6GG*BkBN111111121211114B76BF976AA9JLLQS222LENCJLA9877445449755A5HMHg8354233275223ME9BC771I9RGGGGGJHJFGIHIJHNHQQJPHGHBHIQOHFA999A8Jl866555546666665ABBDE92C2AC26232BD55AA9898BB787656676732233333343333455556676665633311133374359D5554444547946626857331198222B8123325333365533F2LzNNX22222YD*rq69FdXYXRNOONMMOMOOa-PScPOyPbf*i2*ooQxmx*****dgJWISUdRNORMJRDDDDDDDDSXWDACFB222222221111223312212221211119L**Q9MthUk******aZZaVuu*zdccdBZ*h*d**m48VWSNFNKKfKgOzo9LD6D7EF7112121158CPNAAR6F422221433327AA7G65A4BDEDUY34254535444632522222226353598BC9BJIFBNF76A99B8DEB997B8BA89D1-4588711-111BHJM7NADFFDDDCDEF-FFEFCCCDDEFDFDDDEDFRaTMFACAA7899AA9AA98989AXCC9BB9D519AAAAAA9AAA9111945344CCBC4KNPJ222839233323573NOORPBK7CAQBZaVWPVcmPRQYTNSRS5454454444345G66666AC6ABNPPQRPMDEF86662176BB8788--------1-3----2---2-1------1-------35421656763F3 11--LKK-72316DFpvkk*lzm***xPQFMKKSUQJUOQKRSNIJhfq*r***dkeRQQLNECJ6784D54IBK23243AHHGIG3C-Z*TvLlNKHIEICJQLG-FbB*RmSQUH83D7DP8UO3R5i*R-SMV8588TBBME5F768N45PCHDPZihUCmSQKWGSbJaWR8GC9*454HXSkh*izOFCkQVQF ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 256 STR:RPRED 100.0 SQ:SECSTR ccccccGGGTccTTcEEEEETcccHHHHHHHHHHHTTTcEEEEEEccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHTTTcccEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHTTccEEEEEEccGGGTcccTTcHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEcccccccHHccHHHHHHHHHHTccccccccHHHHHHHHHHHHcGGGTTccccEEEEcTTGGGc DISOP:02AL 1-4, 6-9| PSIPRED cccHHHHHHHcccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccEEEEEcccEEcc //