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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57621.1
DDBJ      :             putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  277/915 : Eukaryota  73/199 : Viruses  0/175   --->[See Alignment]
c.1.12
:267 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->240 2v5kA PDBj 6e-54 44.4 %
:RPS:PDB   14->255 1dxeA PDBj 9e-33 41.5 %
:RPS:SCOP  9->255 1dxeA  c.1.12.5 * 2e-72 41.6 %
:HMM:SCOP  1->255 1izcA_ c.1.12.5 * 2.2e-71 39.8 %
:RPS:PFM   22->213 PF03328 * HpcH_HpaI 2e-20 44.1 %
:HMM:PFM   22->246 PF03328 * HpcH_HpaI 1.5e-56 39.8 201/221  
:BLT:SWISS 9->255 HPCH_SALA4 7e-60 45.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57621.1 GT:GENE BAD57621.1 GT:PRODUCT putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2943117..2943920) GB:FROM 2943117 GB:TO 2943920 GB:DIRECTION - GB:PRODUCT putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GB:PROTEIN_ID BAD57621.1 LENGTH 267 SQ:AASEQ MPLRLTPTFRDRLTAADRTLYGGWICSGSPVVAEIMAGAGLDWLLIDMEHAPNGLESVLAQLYAVSGYPSAPMVRVPEGETVIVKQVLDLGAQNILVPMISTPEQAADVAAMTRYPPVGRRGVGSALARSARWNRVEGYLRDDAEHVSLFVQIETAQGVENARAIAETPGVDGVFVGPSDLAASMGLIGQQTHPDVVADVKRAFEGIAAAGKPVGVNAFDPAAAREYAAAGARFILVGADVALLARGSEQLAQTFIPSTDGSPGASY GT:EXON 1|1-267:0| BL:SWS:NREP 1 BL:SWS:REP 9->255|HPCH_SALA4|7e-60|45.9|246/263| SEG 218->232|afdpaaareyaaaga| BL:PDB:NREP 1 BL:PDB:REP 16->240|2v5kA|6e-54|44.4|225/260| RP:PDB:NREP 1 RP:PDB:REP 14->255|1dxeA|9e-33|41.5|241/253| RP:PFM:NREP 1 RP:PFM:REP 22->213|PF03328|2e-20|44.1|170/219|HpcH_HpaI| HM:PFM:NREP 1 HM:PFM:REP 22->246|PF03328|1.5e-56|39.8|201/221|HpcH_HpaI| GO:PFM:NREP 2 GO:PFM GO:0006725|"GO:cellular aromatic compound metabolic process"|PF03328|IPR005000| GO:PFM GO:0016830|"GO:carbon-carbon lyase activity"|PF03328|IPR005000| RP:SCP:NREP 1 RP:SCP:REP 9->255|1dxeA|2e-72|41.6|245/253|c.1.12.5| HM:SCP:REP 1->255|1izcA_|2.2e-71|39.8|254/0|c.1.12.5|1/1|Phosphoenolpyruvate/pyruvate domain| OP:NHOMO 666 OP:NHOMOORG 355 OP:PATTERN ----------------1---1------1--1------------------1------------------ --5--1---------31----1--12-----121211236-1-1--------22211---------2----------------------------------------3--------------------1-------11111----2------------------------1------1---1-111------------------------------------------------11111111111111----------------------------------------------------------------------------1-------------------------------11---------------1--1--------1-222---1211122222222212---2--412421-3111228413112-1--34221211111-1111112----1---------------------------------14--364132222221112122342222122231332--11312311416333---1------------111--1-------11--111-----------------------------------------------2-------------1---------1----------------1-32-1-2222222213-13222222212233323323332111-3233333333333333132211231--11111111111----------------23---2-2--------1----------2-111111-1--1----11-------------------1---1--------------------1111------------------------------------------------- ------1-21-----1111324165321111112111222222111423454B822232111--1------------------------122112-5455--------2-------------------------------------------------1-----------------1------1-111312-1-----2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 254 STR:RPRED 95.1 SQ:SECSTR #ccccccHHHHHHHHTTccEEEEEEccccHHHHHHHTTccccEEEEEcccccccHHHHHHHHHHTTTcccEEEEEcccccHHHHHHHHHTTccEEEEcccccHHHHHHHHHTTccTTTccccccccccGGGGGGTcTTHHHHHTTccEEEEEEccHHHHHTHHHHHTcTTccEEEEcHHHHHHHTTcTTcTTcHHHHHHHHHHHHHHHHTTccEEEEcccHHHHHHHHHTTccEEEEEEHHHHHHHHHHHHHHHH############ DISOP:02AL 1-11, 253-267| PSIPRED ccccccHHHHHHHHHccccEEEEHHHcccHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHcccccccccccHHHcccccccHHHHHHHHccccEEEEEEccHHHHHHHHHHHccccccEEEEccHHHHHHHccccccccHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc //