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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57625.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  194/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:237 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   36->100 3ihuB PDBj 2e-07 41.9 %
:RPS:PDB   10->223 3c7jA PDBj 4e-21 22.0 %
:RPS:SCOP  17->87 1e2xA1  a.4.5.6 * 1e-12 26.8 %
:RPS:SCOP  58->214 1e2xA2  a.78.1.1 * 2e-12 11.2 %
:HMM:SCOP  16->88 1hw1A1 a.4.5.6 * 1e-14 39.7 %
:RPS:PFM   21->72 PF00392 * GntR 8e-05 50.0 %
:HMM:PFM   94->214 PF07729 * FCD 2.6e-23 31.9 119/125  
:HMM:PFM   20->81 PF00392 * GntR 9.5e-17 40.3 62/64  
:BLT:SWISS 38->191 MCBR_ECOLI 7e-09 35.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57625.1 GT:GENE BAD57625.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2947440..2948153) GB:FROM 2947440 GB:TO 2948153 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57625.1 LENGTH 237 SQ:AASEQ MTETHSKTETPSKTETQSKSQRAYEWIHARIADRRFVPGYRLVLGSIAESLGMSVVPVREAIRRLEAEGLVEFERNVGARVAQIDQAEYLHTMQTLGVVEGVATALAVPHLSEADLDRAAAVNARLRALLDDFDPHLFTRINEQFHSVLFEPCPNPHIRDLVHRGWTRMSGLRSSSFAFVPQRARESVDEHEHILDLIRRRADPLEIEMAARQHRWRTMNAYLGQYEPGAHRTGDTD GT:EXON 1|1-237:0| BL:SWS:NREP 1 BL:SWS:REP 38->191|MCBR_ECOLI|7e-09|35.7|154/221| SEG 114->132|adldraaavnarlralldd| BL:PDB:NREP 1 BL:PDB:REP 36->100|3ihuB|2e-07|41.9|62/199| RP:PDB:NREP 1 RP:PDB:REP 10->223|3c7jA|4e-21|22.0|205/232| RP:PFM:NREP 1 RP:PFM:REP 21->72|PF00392|8e-05|50.0|52/64|GntR| HM:PFM:NREP 2 HM:PFM:REP 94->214|PF07729|2.6e-23|31.9|119/125|FCD| HM:PFM:REP 20->81|PF00392|9.5e-17|40.3|62/64|GntR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 17->87|1e2xA1|1e-12|26.8|71/73|a.4.5.6| RP:SCP:REP 58->214|1e2xA2|2e-12|11.2|134/149|a.78.1.1| HM:SCP:REP 16->88|1hw1A1|1e-14|39.7|73/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 314 OP:NHOMOORG 195 OP:PATTERN ------1------------------------------------------------------------- ----11-------------------3----------1244---1--------211111----2---2---------------4--------------------------------------------------------1---------------------------------------------------2-------------------11------11--1-------12------------------------------------------------------------------------------------------211------------21------11-----2-21112-----1--12---1-11--------11322--2--2--33223232223-22-2243214--31132232321-32--11161-11------------11----1------------------------------------552-1------------4311--1-1-623321211-21--15---31-1-----1----------------1-------11---1111111-1-----------------------------------1-----1----1111111111111111111----1----------1---------------------------------------------------------------------11111111111--------------1-21----------------1111--1--1-22221-1121211--2---------------1-11------11----------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 232 STR:RPRED 97.9 SQ:SECSTR ccHHHHHHHccccccGGGHHHHHHHHHHHHHHTccccTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTTEEEEcccHHHHHHHHHHHHHHHHHHHHHHHGGGccTHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHcGGHHHHHcccccccHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHcccTTcHHH##### DISOP:02AL 1-22, 226-237| PSIPRED ccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc //