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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57634.1
DDBJ      :             putative permease
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  110/915 : Eukaryota  11/199 : Viruses  0/175   --->[See Alignment]
:472 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   192->320 3giaA PDBj 8e-06 27.6 %
:RPS:PFM   190->336 PF00324 * AA_permease 1e-09 39.4 %
:HMM:PFM   17->433 PF00324 * AA_permease 1.1e-38 20.4 398/479  
:BLT:SWISS 189->336 YLAT1_MOUSE 7e-10 28.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57634.1 GT:GENE BAD57634.1 GT:PRODUCT putative permease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2960159..2961577 GB:FROM 2960159 GB:TO 2961577 GB:DIRECTION + GB:PRODUCT putative permease GB:PROTEIN_ID BAD57634.1 LENGTH 472 SQ:AASEQ MSENGTQGLRGSVGVVGVVFLVVAAAAPLTAVGGALPVMIALGNGAGSPTAFLVAAAVLLVFSVGYAAMSRHMVDAGAFYAYVREGIGNTVGLGAAGLALLTYTAIQAAIYGLASATLHDLVVHYGGPDLPWFVYALGLIAVVALLGYRNIELGAKVLGVLLVVEIGIILVFSAAVLLRGGAHGVDAVSFTPSAFLGGSPGIALMFAIASFVGFEATAIYGEEARDPKRTVPLSTYAAVLVIGVVYAIASWAMVLAFGSGEVAGAAGADPSGLVFTAAERFLGTAAVEIMRVMLVTSLFAALLAFHNAISRYLYVLARDGHGHPALGRTHAKHGSPHRGSIAQTISAVLVVGAFAAAGADPVLQLFTWLSGLATVSVLSLMVLTSIAVIVFFHRSGLDRRVWHTRIAPALGTVGLLAVTATVLANFTTLVGGSTAAEVLLTLVVAVFVAGVLAARLRARPAPVGEPVPEPGI GT:EXON 1|1-472:0| BL:SWS:NREP 1 BL:SWS:REP 189->336|YLAT1_MOUSE|7e-10|28.9|142/510| TM:NTM 12 TM:REGION 15->37| TM:REGION 48->70| TM:REGION 93->115| TM:REGION 125->147| TM:REGION 158->180| TM:REGION 196->218| TM:REGION 235->257| TM:REGION 285->307| TM:REGION 341->363| TM:REGION 372->394| TM:REGION 406->428| TM:REGION 434->455| SEG 8->36|glrgsvgvvgvvflvvaaaapltavggal| SEG 53->61|lvaaavllv| SEG 92->101|glgaaglall| SEG 134->148|vyalgliavvallgy| SEG 153->171|lgakvlgvllvveigiilv| SEG 347->359|avlvvgafaaaga| SEG 435->471|aaevlltlvvavfvagvlaarlrarpapvgepvpepg| BL:PDB:NREP 1 BL:PDB:REP 192->320|3giaA|8e-06|27.6|123/433| RP:PFM:NREP 1 RP:PFM:REP 190->336|PF00324|1e-09|39.4|137/429|AA_permease| HM:PFM:NREP 1 HM:PFM:REP 17->433|PF00324|1.1e-38|20.4|398/479|AA_permease| GO:PFM:NREP 3 GO:PFM GO:0006810|"GO:transport"|PF00324|IPR004841| GO:PFM GO:0016020|"GO:membrane"|PF00324|IPR004841| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00324|IPR004841| OP:NHOMO 204 OP:NHOMOORG 131 OP:PATTERN ------111-----11-1-------------------------1-----------------152---- -1--31----1---3------2---A------44442-871---1-1-----7321----11----1411------------1------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------1-11-----111111--1------------------------------------------------------1---------------------------------------------------------13-----------1111111-11-----------1--1-----11-1-------------------------1---------------------------------------1-------122111211111122111111221---------------1-1-1------1-----------------------------------------------------------------------------------------------------------------------1---1-------------------------------1-11--------------------------------------------------------11----------------111111-------1-1-1-2-11--------------------------------1-1--111--------------------------------------------------------------- ----32---------------------------------------------------------------------------------------------------1----------------------------------------------------113-------12-11-------------1------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 123 STR:RPRED 26.1 SQ:SECSTR ###############################################################################################################################################################################################HHHHHHHHHHHHHGGG##GGTHHHHHHTTGGGcccHHHHHHHHHHHHHHHHHHHHH###HHHHHHHTTccHHHHHHTGGGHHH#HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHc######################################################################################################################################################## DISOP:02AL 1-11, 469-472| PSIPRED ccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc //