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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57644.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  295/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1c.23.16
:331 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   213->319 1ti9A PDBj 1e-09 28.0 %
:RPS:PDB   34->223 3bhnA PDBj 2e-19 7.7 %
:RPS:PDB   211->319 1bl0A PDBj 1e-23 27.5 %
:RPS:SCOP  4->190 1j42A  c.23.16.2 * 3e-08 18.0 %
:RPS:SCOP  171->314 1v4aA1  a.24.16.4 * 6e-20 15.5 %
:HMM:SCOP  1->191 1pe0A_ c.23.16.2 * 1.4e-42 39.2 %
:HMM:SCOP  210->263 1d5yA1 a.4.1.8 * 4.4e-12 37.0 %
:HMM:SCOP  264->328 1d5yA2 a.4.1.8 * 3e-09 27.7 %
:HMM:PFM   221->261 PF00165 * HTH_AraC 2.3e-10 29.3 41/42  
:HMM:PFM   273->312 PF00165 * HTH_AraC 1.1e-06 38.5 39/42  
:HMM:PFM   53->174 PF01965 * DJ-1_PfpI 9.7e-17 25.8 120/148  
:BLT:SWISS 127->311 GLXA_RHIME 3e-13 33.3 %
:PROS 265->307|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57644.1 GT:GENE BAD57644.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2986273..2987268) GB:FROM 2986273 GB:TO 2987268 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57644.1 LENGTH 331 SQ:AASEQ MTIVAVLASEGAVGFEVMLPGVVFGAANTVCADDRYEIRIVTPEEGATTGAVHGRVRLQSDWGIDTLAAADIVVVPGRDDYRTEPSAAVCQALRAALARGARVASVCVGAFTLAAAGLLDGLRATTHWAHAAELARRYPQVEVDPSVLFIDNGPVLTSAGIAAGLDVCLHLVRQDLGAQVAADTARRIVMPPQRDGGQAQFIAHADPADPDTSLQPVLDWMQANLHRPLTLDDIAAHGAMSVRSLNRRFRAEIGTTPLQWLLRARVHRAQQLLETTGLSVDRVAEESGFGSATTLRYHFTRLTRTSPQAYRTTFQHGDAGDRESALARSSR GT:EXON 1|1-331:0| BL:SWS:NREP 1 BL:SWS:REP 127->311|GLXA_RHIME|3e-13|33.3|174/324| PROS 265->307|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 92->104|alraalargarva| SEG 109->126|gaftlaaaglldglratt| BL:PDB:NREP 1 BL:PDB:REP 213->319|1ti9A|1e-09|28.0|107/129| RP:PDB:NREP 2 RP:PDB:REP 34->223|3bhnA|2e-19|7.7|183/208| RP:PDB:REP 211->319|1bl0A|1e-23|27.5|109/116| HM:PFM:NREP 3 HM:PFM:REP 221->261|PF00165|2.3e-10|29.3|41/42|HTH_AraC| HM:PFM:REP 273->312|PF00165|1.1e-06|38.5|39/42|HTH_AraC| HM:PFM:REP 53->174|PF01965|9.7e-17|25.8|120/148|DJ-1_PfpI| RP:SCP:NREP 2 RP:SCP:REP 4->190|1j42A|3e-08|18.0|178/185|c.23.16.2| RP:SCP:REP 171->314|1v4aA1|6e-20|15.5|142/151|a.24.16.4| HM:SCP:REP 1->191|1pe0A_|1.4e-42|39.2|181/187|c.23.16.2|1/1|Class I glutamine amidotransferase-like| HM:SCP:REP 210->263|1d5yA1|4.4e-12|37.0|54/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 264->328|1d5yA2|3e-09|27.7|65/0|a.4.1.8|2/2|Homeodomain-like| OP:NHOMO 1157 OP:NHOMOORG 297 OP:PATTERN -------------------------------------------------------------------- 1---A--1--1---611----5--17-----143338596-31732------221-----521-5-AEB8-1-------------------1-------------924-6-----------------------------11---1-4111--1-----------1-211--------------1---------------111--1-1111----1--2-1--------1--25----------------------------------------11-------------------------------------------------2-----------------------1-1-11-------------------2-19222-----24454---11-3-1111111-214-55346535691-7554648A848751-12246312236B--------4--11--1--------------------------------2--13234DJJHJE98886DDLOABBA4CKGL6C73--445--31-412333161-11131-------2-1-31-2---1--111--1-112---1-1----23-------------------------------11112-51-21111--1311-2112--2------2-------331-21-22--------2--1----1-2--------3621-331-1--------------3--1----1-2--------------1----------1824---1--------------1--1-122166666ACE79A9A3746-------------1-----121-12211-11------------------------------------------------------------------ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 319 STR:RPRED 96.4 SQ:SECSTR cccEEEEEcTTccHHHHHHHHHHHHHTTTccTcccccEEEEEEEcccEEEcTTTTcEEEccEEGGGGGGccEEEEcccTTHHHHHHTcHHHHHccccTTTcEEEEETTHHHHHHHTTTTTTcEEcccGGGHHHHHHTcEEccccccEcEEEETTEEEEccGGGHHHHHHHHHHHHccHHHHHHHHTTTccTTcHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTccccccT############ DISOP:02AL 310-331| PSIPRED ccEEEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccEEEcccEEEEEccccHHHcccccEEEEcccccccccccHHHHHHHHHHHHcccEEEEcHHHHHHHHHHccccccEEEEcHHHHHHHHHHccccEEEccccEEEccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccc //