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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57645.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  57/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:220 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->187 3b6cA PDBj 1e-13 29.7 %
:RPS:PDB   12->213 3b6aB PDBj 6e-15 28.6 %
:RPS:SCOP  7->70 2hyjA1  a.4.1.9 * 2e-09 29.7 %
:RPS:SCOP  78->217 2g7lA2  a.121.1.1 * 5e-14 15.0 %
:HMM:SCOP  9->70 1zk8A1 a.4.1.9 * 5.7e-11 30.6 %
:HMM:SCOP  77->222 1z0xA2 a.121.1.1 * 3.8e-37 41.3 %
:RPS:PFM   73->214 PF02909 * TetR_C 3e-08 33.8 %
:HMM:PFM   72->216 PF02909 * TetR_C 2.1e-26 33.1 136/139  
:HMM:PFM   16->60 PF00440 * TetR_N 3.9e-11 35.6 45/47  
:BLT:SWISS 8->211 Y1388_MYCBO 3e-10 27.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57645.1 GT:GENE BAD57645.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2987301..2987963) GB:FROM 2987301 GB:TO 2987963 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57645.1 LENGTH 220 SQ:AASEQ MPHRNPARPPLTRDRILSAAVDFADANGIDSLTMRRLGTLLGVEAMSLYNHVRGKAELLDGMVDLVFAEIELPDPGLDWRAAMGARARSVRAALARHRWAIGLMESRKAPGPATLRHHEAVLGCLRGAGFSLALTAHAYALIDSYIYGFALQEATLPFAAPAESEEVAREIMAGLPATEFPHFTELAVGHVLRPGYDFRDEFDYGLDLILDTLEQRRTAP GT:EXON 1|1-220:0| BL:SWS:NREP 1 BL:SWS:REP 8->211|Y1388_MYCBO|3e-10|27.6|203/261| SEG 85->98|ararsvraalarhr| BL:PDB:NREP 1 BL:PDB:REP 10->187|3b6cA|1e-13|29.7|172/202| RP:PDB:NREP 1 RP:PDB:REP 12->213|3b6aB|6e-15|28.6|199/209| RP:PFM:NREP 1 RP:PFM:REP 73->214|PF02909|3e-08|33.8|136/140|TetR_C| HM:PFM:NREP 2 HM:PFM:REP 72->216|PF02909|2.1e-26|33.1|136/139|TetR_C| HM:PFM:REP 16->60|PF00440|3.9e-11|35.6|45/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0016481|"GO:negative regulation of transcription"|PF02909|IPR004111| GO:PFM GO:0016566|"GO:specific transcriptional repressor activity"|PF02909|IPR004111| RP:SCP:NREP 2 RP:SCP:REP 7->70|2hyjA1|2e-09|29.7|64/75|a.4.1.9| RP:SCP:REP 78->217|2g7lA2|5e-14|15.0|127/133|a.121.1.1| HM:SCP:REP 9->70|1zk8A1|5.7e-11|30.6|62/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 77->222|1z0xA2|3.8e-37|41.3|143/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 135 OP:NHOMOORG 57 OP:PATTERN -------------------------------------------------------------------- ----9---------311--------3------22227654-326481------12--1--311-3-A3641-------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------1-----111111111---------------------------------------------------------------1-------111111---------------1------------------------------------------------------------------------13----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1------------------------------------------11----------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 216 STR:RPRED 98.2 SQ:SECSTR #HHHHTcHHHHcHHHHHHHHHHHHHHTcGGGccHHHHHHHTTccHHHHHHTTccHHHHHHHHHHHHGGGccccccTTcHHHHHHHHHHHHHHHHHHcTTHHHHHTTcccccHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHTcccccHHHHHHHHHHHHTccTTTcHHHHHTHHHHHccHcccHHHHHHHHHHHHHHHHHHHc### DISOP:02AL 1-12, 219-220| PSIPRED ccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccc //