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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57648.1
DDBJ      :             putative ABC transporter
Swiss-Prot:             

Homologs  Archaea  64/68 : Bacteria  898/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
c.37.1f.37.1
:604 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   207->586 2hydA PDBj 3e-38 29.4 %
:RPS:PDB   199->293 2bnlB PDBj 4e-06 5.5 %
:RPS:PDB   355->577 3b5jA PDBj 1e-43 36.3 %
:RPS:SCOP  63->332 2hydA2  f.37.1.1 * 4e-18 16.1 %
:RPS:SCOP  355->604 1q3hA  c.37.1.12 * 5e-32 14.0 %
:HMM:SCOP  11->340 1pf4A2 f.37.1.1 * 1.9e-51 28.0 %
:HMM:SCOP  334->574 1pf4A1 c.37.1.12 * 2.5e-59 36.5 %
:RPS:PFM   99->291 PF00664 * ABC_membrane 1e-13 29.9 %
:RPS:PFM   395->458 PF00005 * ABC_tran 5e-04 35.0 %
:HMM:PFM   43->312 PF00664 * ABC_membrane 1.4e-22 22.3 264/275  
:HMM:PFM   395->519 PF00005 * ABC_tran 4.4e-17 30.7 114/118  
:HMM:PFM   490->559 PF02463 * SMC_N 1.3e-05 30.0 70/220  
:HMM:PFM   377->401 PF03193 * DUF258 3.4e-05 45.8 24/161  
:BLT:SWISS 125->288,360->594 Y1383_MYCBO 8e-57 50.2 %
:PROS 491->505|PS00211|ABC_TRANSPORTER_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57648.1 GT:GENE BAD57648.1 GT:PRODUCT putative ABC transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2989329..2991143 GB:FROM 2989329 GB:TO 2991143 GB:DIRECTION + GB:PRODUCT putative ABC transporter GB:PROTEIN_ID BAD57648.1 LENGTH 604 SQ:AASEQ MTATDLAEAREQDTPVTSVAPERTAMSLLRPHLPGFAAVVVLQVVGALAGLVPLLAVVELGRILLSPAPIQEGRVWSVVLAGAAGLFVRLVCGAAASGLAHLLDSRVQLAFRRQLAARLGTVPIGWFSRRRTGELAKVVGEDVSAVHPFLAHTPGELVSAFVVPSASLIYLFTVDWRLTLITLVPVLLAVAVVPLMTTSARQREQAEFDAAMGRIADSVVEFVQGIAVVKTFGGAGRANRRFHRAADEFADTFLRMVRGLAGPAAAMQVALSPPFVLLAVLIGGTVLIRAGDMPPADLLPFLLLGLGLTAPVAALGHGFDDLQAARRAIGRIREVLAEPPLPEPARPAVPRGHRIELRDVRFGYDAGRDVLRGIDLVLEPGTVTALVGPSGSGKSTLVQLLPRFFDPTHGSVRLGGVDLRDLAPAQLYRTVSFVFQDVRLLRASIADNIALAVPHADRDAIERAARGAAIHDRILELPNGYDSVVGVDVVLSGGEAQRLSLARALLAATPVLVLDEATAFADPQTEQAVRRTLSALGGDRTLLVIAHRLETIADADTVAVLDNGTIVERGSPRELLARGGRFAALWETHRTAVADRPSREEAPR GT:EXON 1|1-604:0| BL:SWS:NREP 1 BL:SWS:REP 125->288,360->594|Y1383_MYCBO|8e-57|50.2|393/859| PROS 491->505|PS00211|ABC_TRANSPORTER_1|PDOC00185| TM:NTM 7 TM:REGION 41->63| TM:REGION 77->99| TM:REGION 154->176| TM:REGION 178->199| TM:REGION 215->237| TM:REGION 264->286| TM:REGION 299->321| SEG 37->61|aavvvlqvvgalaglvpllavvelg| SEG 178->195|ltlitlvpvllavavvpl| SEG 294->316|ppadllpflllglgltapvaalg| SEG 333->351|revlaepplpeparpavpr| SEG 480->494|gydsvvgvdvvlsgg| SEG 498->508|rlslarallaa| BL:PDB:NREP 1 BL:PDB:REP 207->586|2hydA|3e-38|29.4|377/578| RP:PDB:NREP 2 RP:PDB:REP 199->293|2bnlB|4e-06|5.5|91/126| RP:PDB:REP 355->577|3b5jA|1e-43|36.3|223/243| RP:PFM:NREP 2 RP:PFM:REP 99->291|PF00664|1e-13|29.9|184/274|ABC_membrane| RP:PFM:REP 395->458|PF00005|5e-04|35.0|60/123|ABC_tran| HM:PFM:NREP 4 HM:PFM:REP 43->312|PF00664|1.4e-22|22.3|264/275|ABC_membrane| HM:PFM:REP 395->519|PF00005|4.4e-17|30.7|114/118|ABC_tran| HM:PFM:REP 490->559|PF02463|1.3e-05|30.0|70/220|SMC_N| HM:PFM:REP 377->401|PF03193|3.4e-05|45.8|24/161|DUF258| GO:PFM:NREP 7 GO:PFM GO:0005524|"GO:ATP binding"|PF00664|IPR001140| GO:PFM GO:0006810|"GO:transport"|PF00664|IPR001140| GO:PFM GO:0016021|"GO:integral to membrane"|PF00664|IPR001140| GO:PFM GO:0042626|"GO:ATPase activity, coupled to transmembrane movement of substances"|PF00664|IPR001140| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00664|IPR001140| GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| RP:SCP:NREP 2 RP:SCP:REP 63->332|2hydA2|4e-18|16.1|267/323|f.37.1.1| RP:SCP:REP 355->604|1q3hA|5e-32|14.0|235/265|c.37.1.12| HM:SCP:REP 11->340|1pf4A2|1.9e-51|28.0|311/311|f.37.1.1|1/1|ABC transporter transmembrane region| HM:SCP:REP 334->574|1pf4A1|2.5e-59|36.5|241/244|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 18005 OP:NHOMOORG 1159 OP:PATTERN 552235-133323322C1166417D68D99C721514212111567BE55HDA277796373115--- B8F6cGEDGGIA59DEFCC-CI22ITDDDDDBLJKJNeWO4KAaNMRHMFCAHKN9EG34IPJHaCLffkGIFEEIGFG8eLH325349965-546B--65C786D6EAC111111131111113ABADGCCIEACAEEJI767T8NDGLCCB8999HBBAFABB9MUadB6F67765D6785B9C65H94G9JJJLJLIOLGLNNILMSONNMPLNNBCGKPLLQRRRRQadCAAAAAA9AAAAA99D98ADVIDGSSF9E8FQPBBUVKD9HGGHJLJLNQKIKNLLNQOOLKPQMPOGIFEGGFGJFFGGNPOEDFPPQNIINJSQQQRRRN9TEKKOOAHFHYEJJPVLG85lhLAAAA88CJJFH69BG3BC99A68776F5ddlIFHLPOTLNMMKNJNKJMj-IKUIEVJQYsC4*ssmqrp*zxrwYP69AIOmUTSWUOJFFFFFFFFGCF8BFFV22332333334643563765454453252375856DRNGQJMMQQMJGGHFLLQZLLJJELMLaJCFB23ECCMCAEAOHUKJQAFK7D8CFC5676967C9AFD9B9M4E9JIAFHBBD29AAEBCEAKABBAMK9K532552222233243343443644467FHD8B6859AICFFGE9BACCCCACBCDDB2-68DC8211222OKSQBJGHJIKHKKJFG-JGFGGGJGHIJKJGGGGGHPTVVWKQGJHFIIJHJJJIGIGIJMEDCEFDGC2PPQQQSQNQQRQ12444554489B972NJMDAC9985786866676798767658IEGJJFMVKPNOQJJEPPR4443454344CGFKHIHIHMKILNDFE9BA9AAA888822A5664455--------i-D43325-6331844111327525223B9F86BEBCB3H6 2243JGD-MB33JMKFFMHHKPNYMXKFECDDDQQMBKHHIGFCCBLJLUPOVTHIOGGEDEF775682874A8A672477766A769-KUBFFNHBADDB7FLKD4DoX*NYQcRbHDBEGODVVCkC**Y1fNkEHEAUHLlMBHFH9PCAxENGNSFW*EdLFCeKN*fVeT8DB8*677FDaYX*EglEGnVcWK ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-22, 339-352, 588-604| PSIPRED cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEcccccHHHccccEEEcccEEEEEEccccccHHHHHHHHHHcccccccEEEEccEEcccccHHHHHHHccccccccEEEcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccEEEEcccHHHccHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHccEEEEEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHHcccccccccc //