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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57655.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  145/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13g.51.1
:400 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   19->157 3dxjF PDBj 7e-08 7.9 %
:RPS:SCOP  29->73 1h3lA  a.177.1.1 * 1e-04 28.9 %
:RPS:SCOP  89->188 1adtA3  g.51.1.1 * 3e-12 15.9 %
:HMM:SCOP  2->73 1h3lA_ a.177.1.1 * 1.4e-09 30.6 %
:HMM:SCOP  94->161 1or7A1 a.4.13.2 * 1.1e-06 27.9 %
:HMM:PFM   104->154 PF08281 * Sigma70_r4_2 6.7e-11 27.5 51/54  
:HMM:PFM   15->75 PF04542 * Sigma70_r2 3.8e-10 31.1 61/71  
:BLT:SWISS 17->316 Y370_RHIME 1e-38 41.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57655.1 GT:GENE BAD57655.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2996149..2997351 GB:FROM 2996149 GB:TO 2997351 GB:DIRECTION + GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD57655.1 LENGTH 400 SQ:AASEQ MMAADAMDAARLRALIPGVLAALVHRGADFATAEDAVQEALVRAVETWPRQHPADEKGWLITTAWRCFLDLARSDTARRRREERMLDEPPPGPTASVDETLQLYFLCAHPSLTPASAVALTLRAVGGLTTRQIARAYLVPEATMAQRISRAKRTVSEIRLDTPGDLRTVLRTLYLVFNEGYSGDVDLAAEAIRLAGQLAAATDDPEVAGLLALFLLHHARRPARTRNDGSLVPLAEQDRTRWRRDLIAQGIAVLQTALARDRLGEYQAQAAIAALHADAPTAAETDWVQIVEWYDELVRLTDSPIVRLNRAVALGEADGPRAGLAALADLDPGLPRYTAADAYLHEKAGELATAARRYVEAAEQADNLAERNHLTLRAAALHQRLADEDRAATKPPCGPG GT:EXON 1|1-400:0| BL:SWS:NREP 1 BL:SWS:REP 17->316|Y370_RHIME|1e-38|41.7|300/100| SEG 2->15|maadamdaarlral| SEG 78->84|rrrreer| SEG 210->224|llalfllhharrpar| SEG 268->283|aqaaiaalhadaptaa| SEG 317->336|adgpraglaaladldpglpr| RP:PDB:NREP 1 RP:PDB:REP 19->157|3dxjF|7e-08|7.9|139/349| HM:PFM:NREP 2 HM:PFM:REP 104->154|PF08281|6.7e-11|27.5|51/54|Sigma70_r4_2| HM:PFM:REP 15->75|PF04542|3.8e-10|31.1|61/71|Sigma70_r2| RP:SCP:NREP 2 RP:SCP:REP 29->73|1h3lA|1e-04|28.9|45/75|a.177.1.1| RP:SCP:REP 89->188|1adtA3|3e-12|15.9|82/126|g.51.1.1| HM:SCP:REP 2->73|1h3lA_|1.4e-09|30.6|72/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 94->161|1or7A1|1.1e-06|27.9|68/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 249 OP:NHOMOORG 147 OP:PATTERN -------------------------------------------------------------------- -23-A---------21111-1---1211111-23337457-213-9------2-11-2--343-313324------------------------------11----13-1--------------------------------------------------------1--1------------------------------------------------------1-------2--------------------------------------------------------------------------------------------------------------------------------------------2-21222------1322---1-111-----------------1--14--3---43123211111----------1---------------1---------------------------------11-----1111111-111111121111-1111--------111-----112-----------------------------------------------111132---------------------------------11-----------------------2---------------------------------------------------------------------------------------------------------------1----------------------------111111111111111---------------------------11-1-11-----------11---------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 139 STR:RPRED 34.8 SQ:SECSTR ##################HHHHHGGGccccccHHHHHHHHHHHHHHHHHcTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHH################################################################################################################################################################################################################################################### DISOP:02AL 1-3, 381-393, 396-400| PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccEEEHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccc //