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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57657.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  143/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.177.1
:139 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   11->76 3dxjF PDBj 4e-07 13.6 %
:RPS:SCOP  11->75 1iw7F3  a.177.1.1 * 5e-08 13.8 %
:HMM:SCOP  4->94 1or7A2 a.177.1.1 * 6.8e-13 31.1 %
:HMM:PFM   12->76 PF04542 * Sigma70_r2 2e-19 36.9 65/71  
:BLT:SWISS 14->74 SIGW_BACSU 9e-06 31.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57657.1 GT:GENE BAD57657.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2999698..3000117) GB:FROM 2999698 GB:TO 3000117 GB:DIRECTION - GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD57657.1 LENGTH 139 SQ:AASEQ MSTSAAATETFLAHRNLLFTVAYEMLGSAADADDVLQETWLRWTAVDTAEVREPHAYLVRITTRQALDRLRSVKRRRESYVGSWLPEPLRPPPRRGAPPTPVGAARPGAGRAGSVPAGTGGPRHPGPVGRARPRRGRDQ GT:EXON 1|1-139:0| BL:SWS:NREP 1 BL:SWS:REP 14->74|SIGW_BACSU|9e-06|31.1|61/187| SEG 86->137|peplrppprrgapptpvgaarpgagragsvpagtggprhpgpvgrarprrgr| RP:PDB:NREP 1 RP:PDB:REP 11->76|3dxjF|4e-07|13.6|66/349| HM:PFM:NREP 1 HM:PFM:REP 12->76|PF04542|2e-19|36.9|65/71|Sigma70_r2| RP:SCP:NREP 1 RP:SCP:REP 11->75|1iw7F3|5e-08|13.8|65/184|a.177.1.1| HM:SCP:REP 4->94|1or7A2|6.8e-13|31.1|90/113|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| OP:NHOMO 242 OP:NHOMOORG 144 OP:PATTERN -------------------------------------------------------------------- -11-A---------43311-13--2411111-43336143121519--------------222-1155B4------------1--------------------------1----------------------------------1-1-------------------1---------------------------111111-1-1111-1-111--111-------------13--------------------------------------------------------------------------------------------------------------------------------------------1--1111-------1---111--1-----------1-121-11-1-11-1---1-1-11111------1--1--1-------------------------------------------------11--111-122221-11111122111111211-1-1--11----111-1-1-----------------------------------------------52-312--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------22----------------11---------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 66 STR:RPRED 47.5 SQ:SECSTR ##########HHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHccc############################################################### DISOP:02AL 1-3, 92-111, 127-139| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHcccccccccccHHHHHHHcccccccccccccccccccccccccc //