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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57659.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  15/68 : Bacteria  490/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:458 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   56->443 PF01235 * Na_Ala_symp 8e-90 48.2 %
:HMM:PFM   50->446 PF01235 * Na_Ala_symp 5.9e-137 44.4 392/416  
:BLT:SWISS 61->443 Y883_HAEIN 9e-82 43.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57659.1 GT:GENE BAD57659.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3001402..3002778) GB:FROM 3001402 GB:TO 3002778 GB:DIRECTION - GB:PRODUCT putative transporter GB:PROTEIN_ID BAD57659.1 LENGTH 458 SQ:AASEQ MDAFLSEASDFIWGPWLLIPLLLLTGLYLTVLLRGVQFRHFGLAFWLAFVKRRDHDAEGDISHYQALSTALAATVGVGNIAGVATAIALGGPGAVFWMWCTGLVGMATKYSEAFLGVRFRRTDAAGEQAGGPMHYLRQGIKGPLGVFLGGFFAVAGVFASFGIGNMTQANTVAANVESEWGLPTWATGVIITALTAAVILGGIKSIGRVTSLFVPFMIIVYILGAAAVLAFNIAEVPAAIGLIVTDAFTGTAATGGFVGAGVAAAIRYGVARGIFSNESGLGTGGIAAAAAQTTHPVRQALVSMTQTFIDTLVVVSFTALTIVVTGVWKGEGSPATFTAEAFRQGLPGDWGSVIVTVGVILFAFSTVLGWSYYGDRCVEYLFGRRLVLPYRIVFIAVVYVGATRELATVWTFSDVANGLMALPNLVGLLILSPLVYRETKAYFDGRQPEDERTKVTVE GT:EXON 1|1-458:0| BL:SWS:NREP 1 BL:SWS:REP 61->443|Y883_HAEIN|9e-82|43.3|381/456| TM:NTM 10 TM:REGION 21->43| TM:REGION 75->97| TM:REGION 142->164| TM:REGION 183->205| TM:REGION 218->240| TM:REGION 248->270| TM:REGION 305->327| TM:REGION 349->371| TM:REGION 386->408| TM:REGION 415->437| SEG 12->33|iwgpwlliplllltglyltvll| SEG 144->162|lgvflggffavagvfasfg| SEG 247->265|aftgtaatggfvgagvaaa| SEG 287->291|aaaaa| RP:PFM:NREP 1 RP:PFM:REP 56->443|PF01235|8e-90|48.2|384/408|Na_Ala_symp| HM:PFM:NREP 1 HM:PFM:REP 50->446|PF01235|5.9e-137|44.4|392/416|Na_Ala_symp| GO:PFM:NREP 3 GO:PFM GO:0005283|"GO:sodium:amino acid symporter activity"|PF01235|IPR001463| GO:PFM GO:0006814|"GO:sodium ion transport"|PF01235|IPR001463| GO:PFM GO:0016020|"GO:membrane"|PF01235|IPR001463| OP:NHOMO 954 OP:NHOMOORG 505 OP:PATTERN --1-----------------------------------11111--1---1111-1111---------- -----221112222-------1---2------11111-11------341----1-32------1-21-111--------344------1111-1---------42-1-1-22222222222222411-1-1--111-----------11-11-----111111-------2-11----1--1---111--1-226676766736767773556346761113336------1-22222222222222221112--------------------------1111111-111111111111111111111111111111111111-14--7767777172-311322214-41-231-11-3---31-11---41--1----------------------1111111111----------1-1-----------32-1221112----111----------------1111222211---------------2232-1-1-----12111111-111111--1111112-------------------------1--1313333333---1----1-52-2--211---------11--1-----12-1-1111-111111111111--1--333221112314333343333333334334--11-11------11--21-1111111111-1111111111111111111111--22221222122222222121-11----1----------------1----------132322211222222222211111-1-321-33331111211112111---------14446333333344412-1-11---------13111111--------12-------------------------------------11 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 46-64, 445-458| PSIPRED cHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccHHHHHEEEccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccEEccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc //