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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57660.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  114/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:307 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   103->303 1us5A PDBj 2e-09 24.6 %
:RPS:PDB   62->186 1biyA PDBj 1e-12 11.2 %
:RPS:SCOP  62->303 1us4A  c.94.1.1 * 7e-29 23.1 %
:HMM:SCOP  30->303 1us5A_ c.94.1.1 * 2.7e-50 36.3 %
:RPS:PFM   120->221 PF00497 * SBP_bac_3 3e-04 31.8 %
:HMM:PFM   31->184 PF00497 * SBP_bac_3 1.7e-09 26.1 142/225  
:BLT:SWISS 101->303 BCSP_BRUME 4e-13 28.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57660.1 GT:GENE BAD57660.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3002907..3003830) GB:FROM 3002907 GB:TO 3003830 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD57660.1 LENGTH 307 SQ:AASEQ MSVSPVRGFSRRGFLMLAGLAAASACAGGDPPAVRLASGEIGGFYYAFARLLAEAAARAGTVRIETVVTAGSQENLALLAEGRVDAALALADSAREARPGLLALGRVYENYLQLAVRTDSPVHTVAELRGARVNLGATGSGAAMTGERLLLAAGLDPATDVVVTHQPLREAVAALSGGAIDALLWAGGVPTAALAVPSRMRLLELGQLAAPLRARYGPVYDRVQIPADAYPGGPTVHTVGVANLLLAAPAMSAEAAAAIVDLLLTRTDELVPAEAAGTQFLDARSLIGTGTVPLHPGAAEEYRRRHG GT:EXON 1|1-307:0| BL:SWS:NREP 1 BL:SWS:REP 101->303|BCSP_BRUME|4e-13|28.9|201/329| SEG 15->29|lmlaglaaasacagg| SEG 44->59|fyyafarllaeaaara| SEG 85->98|daalaladsarear| SEG 244->258|lllaapamsaeaaaa| BL:PDB:NREP 1 BL:PDB:REP 103->303|1us5A|2e-09|24.6|199/297| RP:PDB:NREP 1 RP:PDB:REP 62->186|1biyA|1e-12|11.2|125/689| RP:PFM:NREP 1 RP:PFM:REP 120->221|PF00497|3e-04|31.8|85/222|SBP_bac_3| HM:PFM:NREP 1 HM:PFM:REP 31->184|PF00497|1.7e-09|26.1|142/225|SBP_bac_3| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00497|IPR001638| GO:PFM GO:0006810|"GO:transport"|PF00497|IPR001638| GO:PFM GO:0030288|"GO:outer membrane-bounded periplasmic space"|PF00497|IPR001638| RP:SCP:NREP 1 RP:SCP:REP 62->303|1us4A|7e-29|23.1|242/298|c.94.1.1| HM:SCP:REP 30->303|1us5A_|2.7e-50|36.3|273/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 136 OP:NHOMOORG 124 OP:PATTERN -------------------11--1-11------------------------------1111---1--- ---------------------1---1------1---1-22-2----------111-----11--4-2111---------------------------------------------------------------------11-------------------------------------------112-----------------------1---------111--------1--------------------------------------------------------------------------------------------1----------------------------1-----1---------------------------111--11111111111111112--------11---------------1-------111112--------------111--1-1111----------------------------1111------------------------1-1-11----------11----------------------1-------1--------1-1-------------1---------------------------1-----------1111-1-1111-1-11-1----1-1-----------------------------------------------------------------------------------------------------------11------------1-------11---1111----21---2-------------1111----------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 245 STR:RPRED 79.8 SQ:SECSTR #############################################################cccEEEccccHHHHHHHHHTTccccEEEcHHHHHHHTEcEEETTEEEcEEEEEEEEEcccccccTTcTTcEEEEcccccTTTHHHHHHHGGGGcccTTTccHHHHHHHHccEEEcTTccTTTcHHcccTTcTTcTccEEEcccTTcTTcccEEEEEEcccccccEEEEETTccHHHHHHHHHEEEEETTccHHHHHTcccEEEEEHHHHHHHHHTTcEEcccGGGcGGGcEEEEEEEEHHHHHHc# DISOP:02AL 1-4, 306-307| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHcccEEEEEEcccHHHHHHcccEEEEEEEccEEEEEEEcccccccHHHHcccEEEEccccccHHHHHHHHHHHHcccHHHcEEEEEccHHHHHHHHHcccEEEEEEEccccHHHHHHHcccccEEcccHHHHHHHHccccEEEEEEccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHccccccccHHHHHHHHHHcc //