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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57663.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  20/68 : Bacteria  488/915 : Eukaryota  23/199 : Viruses  1/175   --->[See Alignment]
f.38.1
:453 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   284->430 2cfqA PDBj 4e-04 25.7 %
:RPS:PDB   81->216 2d33D PDBj 2e-07 8.3 %
:RPS:SCOP  20->396 1pw4A  f.38.1.1 * 2e-09 13.7 %
:HMM:SCOP  1->430 1pv7A_ f.38.1.2 * 1.4e-66 28.2 %
:RPS:PFM   43->430 PF00083 * Sugar_tr 4e-26 32.0 %
:HMM:PFM   20->430 PF00083 * Sugar_tr 5.5e-40 22.1 398/451  
:BLT:SWISS 4->409 KGTP_SHIFL e-103 48.9 %
:PROS 75->91|PS00216|SUGAR_TRANSPORT_1
:PROS 299->316|PS00216|SUGAR_TRANSPORT_1
:PROS 125->150|PS00217|SUGAR_TRANSPORT_2
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57663.1 GT:GENE BAD57663.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3005963..3007324) GB:FROM 3005963 GB:TO 3007324 GB:DIRECTION - GB:PRODUCT putative transporter GB:PROTEIN_ID BAD57663.1 LENGTH 453 SQ:AASEQ MTTTQPGSERRVVANVLRGSIGNLVEWYDWYVYAAFSVYFAKAFFPEGDATAQLLSTAAVFAVGFLMRPLGGWALGRYADRFGRRSALTLSVTVMAAGSLLIAVTPGYATIGIAAPVILLLARLLQGLSVGGEYATSATYLSEVASKGRRGFYSSFQYVTLVAGQLTALGVQILLLQVLTDDQMHSWGWRIPFVIGATGALVVMWLRRGMDESEQFRAVEADESGAAPAAARGSLRMLLRYPRECLLVVGLTLGGTVAFYTYTTYMQKFMINTSGLEKGTVAWINFVALLVFVVLQPLAGGLSDRIGRRKLLIFFGVGGTVLTVPIMMVLAQTSNPLAAFGLMMLALVIVTGYTSINSIVKAELFPTKIRALGVGLPYALTVAIFGGTAEMIALALKKADLEAVYFFYVAGCVAISLVTYYFMRETSAESTIDGDTAQPVDGGPERDLTGARA GT:EXON 1|1-453:0| BL:SWS:NREP 1 BL:SWS:REP 4->409|KGTP_SHIFL|e-103|48.9|397/432| PROS 75->91|PS00216|SUGAR_TRANSPORT_1|PDOC00190| PROS 299->316|PS00216|SUGAR_TRANSPORT_1|PDOC00190| PROS 125->150|PS00217|SUGAR_TRANSPORT_2|PDOC00190| TM:NTM 12 TM:REGION 26->48| TM:REGION 51->73| TM:REGION 86->106| TM:REGION 110->132| TM:REGION 156->178| TM:REGION 185->206| TM:REGION 245->267| TM:REGION 278->300| TM:REGION 311->333| TM:REGION 335->357| TM:REGION 373->395| TM:REGION 402->424| SEG 218->231|aveadesgaapaaa| SEG 246->257|llvvgltlggtv| BL:PDB:NREP 1 BL:PDB:REP 284->430|2cfqA|4e-04|25.7|144/417| RP:PDB:NREP 1 RP:PDB:REP 81->216|2d33D|2e-07|8.3|121/499| RP:PFM:NREP 1 RP:PFM:REP 43->430|PF00083|4e-26|32.0|372/433|Sugar_tr| HM:PFM:NREP 1 HM:PFM:REP 20->430|PF00083|5.5e-40|22.1|398/451|Sugar_tr| GO:PFM:NREP 4 GO:PFM GO:0005215|"GO:transporter activity"|PF00083|IPR005828| GO:PFM GO:0006810|"GO:transport"|PF00083|IPR005828| GO:PFM GO:0016021|"GO:integral to membrane"|PF00083|IPR005828| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00083|IPR005828| RP:SCP:NREP 1 RP:SCP:REP 20->396|1pw4A|2e-09|13.7|358/434|f.38.1.1| HM:SCP:REP 1->430|1pv7A_|1.4e-66|28.2|400/417|f.38.1.2|1/1|MFS general substrate transporter| OP:NHOMO 2982 OP:NHOMOORG 532 OP:PATTERN ------488AAA88B5-6233321-------------------------------------215---- -1-1231577C-4154422-28--2V2222225999DNqq--224-1--441QKL627-----438S87311111322-13-A-1111--------1--1-2---2-2-2-----------------1-1---1--1----11111--------------131---------1-----1-----1------2-3222222211222222-----2222-23--1-------1-1111111111111111-112----22-2-----2211---11--------------------------------------------------------------------------------------------------1--44461442452H551-32323255555554547-66A55H7D221-666622345544C4-----5-----1-32333333644221-144233444113368AC86G6676673233-1564-73346ZQQXRVEGIIFWWgOLNLJCJZJfBKFC-5FC832711711-9436---1141-------11--1-1--1----21--------------111111-----1-5445341-2222212-----111-1---------------1--------------1---------8878186677A788866-777678867778877677789866--28878788887778787945654551-544443344443----22222575711-11-------22211--188989581126-A9B9CFE91FGGF-CBC96655A666----------1----55545444461111---------------------------------------------------------1- ---------------1-11--------------------------------------------------------------11-------------------1-1---6------------------------------------------------------3------------11-----1----31222323111 --------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------- STR:NPRED 265 STR:RPRED 58.5 SQ:SECSTR ################################################################################cccTTccccccHHHHHHHHHHHHHcccHHHH########TTccEETTEEccccccccccGGGccccEEEEccccTTccHHHHHHHHcccEEEEEEE#######EccTTcTTcccHHHHHHHHHHHHHHHHcccccc###################################################################HHHHHHHHHHHHHHHHHHHHTTcTTccHHHHHHHHTTccHHHHHHHT###HHHHHHTTccHHHHGccTTHHHHTTHHHHHHHHHHHHHHTccHHHHcccTTTHHHHHHHHHHHHHHHccHHHHTTTTTTTTTHHHHccccccccccc####################### DISOP:02AL 1-7, 217-234, 434-453| PSIPRED cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccccccccc //