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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57665.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  16/68 : Bacteria  217/915 : Eukaryota  36/199 : Viruses  0/175   --->[See Alignment]
f.38.1
:500 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   98->311 2d33D PDBj 2e-08 7.2 %
:RPS:SCOP  16->166 1pw4A  f.38.1.1 * 2e-07 16.4 %
:HMM:SCOP  15->480 1pw4A_ f.38.1.1 * 1.9e-70 29.5 %
:RPS:PFM   50->355 PF00083 * Sugar_tr 2e-15 27.4 %
:HMM:PFM   76->466 PF00083 * Sugar_tr 3.1e-45 23.9 377/451  
:BLT:SWISS 25->264 YYAJ_BACSU 5e-17 30.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57665.1 GT:GENE BAD57665.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 3008431..3009933 GB:FROM 3008431 GB:TO 3009933 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD57665.1 LENGTH 500 SQ:AASEQ MVRFPAAATGKITIMTTVRTRIPARLDRLPWSRWHWMIVVGLGSVWIIDGLEVTVVGSVAGRLSEPGSGLPISAAQVSGLAAAMYVAGACVGALLFGWLTDRYGRKRLFIITLAVYLAATALTALSFSVWWFVLCRFFTGLGIGGEYAAINSAVDELIPSKYRGRVDIVINGTYWLGASGGALLSVAALNPELFAPNIGWRLMFGIGVVFGLLVLVVRRHVPESPRWMFIHGRDRQAEELVDGIEEQVRRDTGAELPEVEEIVQVRQRRSTGFGEIASVMFRRYPRRSALGLSLFIGQAFLYNAVTFNFAVILGRSFDVPADRAGYYYAVMCLGSFFGPLLLGRYFDTVGRKPMITASYLGSGLLLLLTAVLLVRGDLTAVTLTACWAIVLFVASCGASSAYLTVSEIFPMETRAMAIAFFYAIGTAAGGIAGPLVFAELTGDGDPGRTALAFAIGATMMILAGLVELVLGVRAEQRSLESIAAPLSFQSDEPDTAGVRR GT:EXON 1|1-500:0| BL:SWS:NREP 1 BL:SWS:REP 25->264|YYAJ_BACSU|5e-17|30.3|231/451| TM:NTM 10 TM:REGION 37->59| TM:REGION 73->95| TM:REGION 113->135| TM:REGION 169->191| TM:REGION 196->217| TM:REGION 293->315| TM:REGION 325->347| TM:REGION 366->388| TM:REGION 417->439| TM:REGION 450->472| SEG 112->125|tlavylaataltal| SEG 176->189|lgasggallsvaal| SEG 204->217|fgigvvfgllvlvv| SEG 356->374|tasylgsgllllltavllv| SEG 417->433|aiaffyaigtaaggiag| RP:PDB:NREP 1 RP:PDB:REP 98->311|2d33D|2e-08|7.2|209/499| RP:PFM:NREP 1 RP:PFM:REP 50->355|PF00083|2e-15|27.4|292/433|Sugar_tr| HM:PFM:NREP 1 HM:PFM:REP 76->466|PF00083|3.1e-45|23.9|377/451|Sugar_tr| GO:PFM:NREP 4 GO:PFM GO:0005215|"GO:transporter activity"|PF00083|IPR005828| GO:PFM GO:0006810|"GO:transport"|PF00083|IPR005828| GO:PFM GO:0016021|"GO:integral to membrane"|PF00083|IPR005828| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00083|IPR005828| RP:SCP:NREP 1 RP:SCP:REP 16->166|1pw4A|2e-07|16.4|146/434|f.38.1.1| HM:SCP:REP 15->480|1pw4A_|1.9e-70|29.5|430/447|f.38.1.1|1/1|MFS general substrate transporter| OP:NHOMO 493 OP:NHOMOORG 269 OP:PATTERN ------4333533224-----1-------------------------1-------------1421--- --1-1112111-3--11-------12-----1----1-58-1----21-11-121-11----12--521--2111-22--1-2---11---------------------1-----------------------------------1-------------------------------------111-----114111111111111111--11121111211----------1------------------------11-----11--11--111-1--------------------------------------------------1------------22--------------32-2-----1-------------1------12111111111111111111112-11311414--1--11111-12---2------1---------------411-11-------------------------------------1---24665544333333C73333-481H6431--222--2--1---1112-----------------1-------------------------------------------------------------------------------1----1-11-1-----------------11--------------------------------111----1----------------3-------------------------------------1----------------3343312-1---22331231--11-1112-------------1----------1------------------------------------------------------------------------ -------------------2------1-----------------11---111----1------------------------------1------------1----2---1---11---------22---11--------1----------1--1-112---------------14----511---1----11--2211- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 209 STR:RPRED 41.8 SQ:SECSTR #################################################################################################TTcccccTTccccccHHHHHHHHHHHHHcccHHHHTTccEETTEEccccccccccGGGccccEEEEccc#cTTccHHH####HHHHHcccEEEEEEEEccTTcTTcccHHHHHHHHHHHHHHHHcccccccHHHHHHTHHHHcTTccccEEHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcGGGcHHHHHHHHHHHHHHHHHHHHHHH############################################################################################################################################################################################# DISOP:02AL 1-19, 259-276, 485-500| PSIPRED cccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccccc //