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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57673.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  32/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.6c.69.1
:350 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   293->340 1fseE PDBj 4e-07 45.8 %
:RPS:PDB   26->275 3e3aB PDBj 1e-14 18.5 %
:RPS:PDB   279->340 3cloA PDBj 3e-15 33.9 %
:RPS:SCOP  18->275 1iunA  c.69.1.10 * 1e-14 16.5 %
:RPS:SCOP  290->340 1h0mA1  a.4.6.2 * 1e-13 27.5 %
:HMM:SCOP  18->275 1q0rA_ c.69.1.28 * 1.8e-37 35.1 %
:HMM:SCOP  271->350 1p4wA_ a.4.6.2 * 2.5e-16 37.5 %
:RPS:PFM   292->340 PF00196 * GerE 1e-09 55.1 %
:HMM:PFM   291->345 PF00196 * GerE 2.6e-19 41.8 55/58  
:HMM:PFM   68->262 PF00561 * Abhydrolase_1 6.3e-11 26.2 195/231  
:BLT:SWISS 18->201 DHMA2_MYCTU 5e-05 28.2 %
:BLT:SWISS 253->340 Y914_MYCBO 8e-09 37.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57673.1 GT:GENE BAD57673.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3014506..3015558) GB:FROM 3014506 GB:TO 3015558 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57673.1 LENGTH 350 SQ:AASEQ MTIGKGGIMLRVEDQLVRHLKTSGGDIAYSAVGSGPPLLVGGWWCSHLTLNWEDPLFRAYLTRLAERFTVIRYDQPGRGASGTGGNTLDLDGEIAVTTELIEALGLDRLALVGASSGAAVAAGLAARMPGRVHRLVLYGAFARGADIAPEAARRAMVDAISAHWGLGSRLLADIFIPGAGNAERERFAQFQRLSATAEQAARSLAGAYALDATDYLAALTVPTTVLHRRDDRAVPFALGVDVARRVRRATFVELPGEDHFPWRGDAGGVADATLRGLGHPIRSHPTPPGPAALTEREREILRLVADGLTDAQIGERLTLSPHTVHRHIANARIKLGVRSRAAAAAAIRDR GT:EXON 1|1-350:0| BL:SWS:NREP 2 BL:SWS:REP 18->201|DHMA2_MYCTU|5e-05|28.2|177/286| BL:SWS:REP 253->340|Y914_MYCBO|8e-09|37.9|87/882| SEG 109->126|lalvgassgaavaaglaa| SEG 204->220|lagayaldatdylaalt| SEG 341->346|aaaaaa| BL:PDB:NREP 1 BL:PDB:REP 293->340|1fseE|4e-07|45.8|48/64| RP:PDB:NREP 2 RP:PDB:REP 26->275|3e3aB|1e-14|18.5|243/275| RP:PDB:REP 279->340|3cloA|3e-15|33.9|62/249| RP:PFM:NREP 1 RP:PFM:REP 292->340|PF00196|1e-09|55.1|49/57|GerE| HM:PFM:NREP 2 HM:PFM:REP 291->345|PF00196|2.6e-19|41.8|55/58|GerE| HM:PFM:REP 68->262|PF00561|6.3e-11|26.2|195/231|Abhydrolase_1| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00196|IPR000792| GO:PFM GO:0005622|"GO:intracellular"|PF00196|IPR000792| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00196|IPR000792| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00196|IPR000792| RP:SCP:NREP 2 RP:SCP:REP 18->275|1iunA|1e-14|16.5|254/272|c.69.1.10| RP:SCP:REP 290->340|1h0mA1|1e-13|27.5|51/65|a.4.6.2| HM:SCP:REP 18->275|1q0rA_|1.8e-37|35.1|248/297|c.69.1.28|1/1|alpha/beta-Hydrolases| HM:SCP:REP 271->350|1p4wA_|2.5e-16|37.5|80/0|a.4.6.2|1/1|C-terminal effector domain of the bipartite response regulators| OP:NHOMO 39 OP:NHOMOORG 32 OP:PATTERN -------------------------------------------------------------------- ----1----------------1--13------11112-41-----1---1------------1-----1-------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------1-------21------------------------------1---------11-1---1---1-------1----------------------------------------------------------------------1---------1-1-----------------------------------------------------------------1--1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 338 STR:RPRED 96.6 SQ:SECSTR ##########EEEccEEEEEEETTEEEEEEEEcccEEEEEccTTccGGGHHGTTTHHHHHHHHHHTTEEEEEEccTTcGGGcTTcccccHHHHHHHHHHHHHHTTcccEEEEEETHHHHHHHHHHHHcGGGEEEEEEEcccccHHHHHHHHTTccccHHHHHHHHHHHHccHHHHTcHHHHHHHHHHHHHccccccHHHHHHcTTcccccccGGGGGGccccEEEEEETTcccccHHHHHHHHHHcTTEEEEEETTccTTHHHHcHHHHHHHHHHHHHEEEEcccHHHHTTcccHHHHHHHHHHHTTccHHHHHHHHTccHHHHHHHHHHHHHHTTcccHcHHHHHHH## DISOP:02AL 1-4, 278-294| PSIPRED ccccccccccccccccEEEEEEccEEEEEEEEccccEEEEEccccccccccccHHHHHHHHHHHHcccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHcHHHHcEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHccccEEEEEccccccccHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHc //