[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57679.1
DDBJ      :             putative amidase
Swiss-Prot:             

Homologs  Archaea  40/68 : Bacteria  620/915 : Eukaryota  86/199 : Viruses  0/175   --->[See Alignment]
c.117.1
:479 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   61->463 2dqnA PDBj 3e-21 34.1 %
:RPS:PDB   5->475 2dqnA PDBj 3e-60 21.8 %
:RPS:SCOP  5->475 2df4A1  c.117.1.1 * 6e-61 21.8 %
:HMM:SCOP  3->476 1m22A_ c.117.1.1 * 1.5e-99 39.4 %
:RPS:PFM   61->456 PF01425 * Amidase 5e-33 39.8 %
:HMM:PFM   47->456 PF01425 * Amidase 3.3e-84 35.6 399/435  
:BLT:SWISS 1->24 ARYC_NOCGL 4e-08 100.0 %
:BLT:SWISS 10->473 NYLA_PSES8 3e-59 40.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57679.1 GT:GENE BAD57679.1 GT:PRODUCT putative amidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3019190..3020629) GB:FROM 3019190 GB:TO 3020629 GB:DIRECTION - GB:PRODUCT putative amidase GB:PROTEIN_ID BAD57679.1 LENGTH 479 SQ:AASEQ MDVAEYAAHDATGLAELIREGQVSAAEVWTAAATALDAVEPELAAVAGERFDKPLDYDESGPFAGVPFALKDLIAHAGGVPSRSGSRLFGAGVAHPEDTHLVARFRRAGLAIGAITRSPEFGFNATTEAIAYGGPSRNPWATDRSPGGSSGASAALVASGALPMAHANDGGGSIRIPAAACGAVGLKPSRGRTTPGPDFADPLLGLGIEFAVTRTVRDCARLLDAVHGAEPGDRYLLPGPVRSYAEHAAAGSRPLRIAVTTTPMDAGRAVDPECVAAVNRVAERLAELGHVVEEAAPELDVAAFDKANLDAWCSFLADAVLGASAQLGVQPSREYLEATTLACVEYGKTLSAFDIFTADRVFNQTTRAVAGFLTRYDVLLTPTTSAPPIPLGHLDADDASLSAREWYDRIFDYGSFTALFNVTGMPAISLPLAESTAGLPIGIQFAGRYGDEATLLALAGDLERAMPWADRRPAVHVGR GT:EXON 1|1-479:0| BL:SWS:NREP 2 BL:SWS:REP 1->24|ARYC_NOCGL|4e-08|100.0|24/28| BL:SWS:REP 10->473|NYLA_PSES8|3e-59|40.7|452/493| SEG 25->40|aaevwtaaataldave| SEG 145->163|spggssgasaalvasgalp| BL:PDB:NREP 1 BL:PDB:REP 61->463|2dqnA|3e-21|34.1|381/485| RP:PDB:NREP 1 RP:PDB:REP 5->475|2dqnA|3e-60|21.8|455/485| RP:PFM:NREP 1 RP:PFM:REP 61->456|PF01425|5e-33|39.8|372/425|Amidase| HM:PFM:NREP 1 HM:PFM:REP 47->456|PF01425|3.3e-84|35.6|399/435|Amidase| GO:PFM:NREP 1 GO:PFM GO:0016884|"GO:carbon-nitrogen ligase activity, with glutamine as amido-N-donor"|PF01425|IPR000120| RP:SCP:NREP 1 RP:SCP:REP 5->475|2df4A1|6e-61|21.8|455/485|c.117.1.1| HM:SCP:REP 3->476|1m22A_|1.5e-99|39.4|447/490|c.117.1.1|1/1|Amidase signature (AS) enzymes| OP:NHOMO 1609 OP:NHOMOORG 746 OP:PATTERN 11-1--1322222211-------211111123-1----1111-11111111111------------11 2482422322322264555-54226B55555645556BCA23241231122142322111355215644221111111-111411111--------1--------1-11111111111-11111----111-1--1333331111523212232211111211121133421111111111113221111131111111111111111121222111122122111111112211111111111111111111312122121111111221111132222232222122111111111111322312232232122111222211-211111111111--111---112--111112211111111111111-2113337-----11FFF1218469122442421222-336313473651522432222453D3-3--2433331232222222232211--2111---------------------------116--8785785766A25555558555553985657A41223-245334262863211111-111111111111222224111211111111111111214433541111111-------1-------1111122----21---1--------1------1------11121--------31---------------------------------11111-------------------2-------------------------11111333314323---------------11111121221143432724223422635---------1----------------------------111111--11---------1--------------------------111--12111221 --------------1-13-1323-2----112221--1-1--1111--13112-21---222-------------1-------------12-1-1----1-1-111-1-13-----111--------1-141-112---1----1----------111-11--11--11----2-11116221114345223--1-112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 475 STR:RPRED 99.2 SQ:SECSTR ####TTTTccHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHccEEEEcHHHHHHTcccccccccEEEEETTcccTTTccccTTcGGGcTTcccccccHHHHHHHHTTcEEEEEEcccGGGcccccTTcccccccccTTcTTcccccccHHHHHHHHTTcccEEEEEccccTTHHHHHHHTcEEEEccTTccccTTccccccTTTccEEEEEccHHHHHHHHHHHccccTTcTTccccccccccTTTTcccTTcEEEEEGGGGcTTccccHHHHHHHHHHHHHHHHTTcEEEEEccGGGGGHHHHHHHHHHHHHHHHTTTcccccccccccHHHccHHHHHHHHHHHHHHcTTTHHHHHHHHHHHHHHHHHHHHccEEEEEccccccccTTTcTTcHHTEEEEHHHHHHHHTTTTTHHHHHHTccEEEEEEEEETETEEEEEEEEccTTcHHHHHHHHHHHHHHcccTTTGGGcccEE DISOP:02AL 476-477| PSIPRED ccHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHccccccccHHHHHHHHHcccEEEEcccccHHHcccccccccccccccccccccccccccccHHHHHHHccccEEEEcccccccccHHHHHcccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccccccc //