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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57683.1
DDBJ      :             putative DNA glycosylase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  111/915 : Eukaryota  110/199 : Viruses  0/175   --->[See Alignment]
c.18.1
:184 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->164 1mugA PDBj 5e-39 48.6 %
:RPS:PDB   12->165 2d07A PDBj 1e-24 35.8 %
:RPS:SCOP  21->165 1mtlA  c.18.1.2 * 2e-26 47.5 %
:HMM:SCOP  20->185 1mugA_ c.18.1.2 * 1.2e-46 36.4 %
:RPS:PFM   27->166 PF03167 * UDG 3e-04 33.6 %
:HMM:PFM   23->172 PF03167 * UDG 7e-28 26.9 134/150  
:BLT:SWISS 21->164 MUG_ERWCT 1e-40 51.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57683.1 GT:GENE BAD57683.1 GT:PRODUCT putative DNA glycosylase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3022429..3022983) GB:FROM 3022429 GB:TO 3022983 GB:DIRECTION - GB:PRODUCT putative DNA glycosylase GB:PROTEIN_ID BAD57683.1 LENGTH 184 SQ:AASEQ MVSAAYRPTPADLAAAAGTTIPDVVGPDLRVLFCGINPGLWSGATGHHFARPGNRFWPALFRSGFTPRLFRPDEQEELLALGLGITNVVPRTTAKADELTTAELREGGRALTERVRRYRPKALAVLGIGAYRTAFGRPRTTVGRQDETIADTEIWVLPNPSGLNAHYTLDALAAEFRALREATR GT:EXON 1|1-184:0| BL:SWS:NREP 1 BL:SWS:REP 21->164|MUG_ERWCT|1e-40|51.4|144/167| SEG 171->182|alaaefralrea| BL:PDB:NREP 1 BL:PDB:REP 21->164|1mugA|5e-39|48.6|144/165| RP:PDB:NREP 1 RP:PDB:REP 12->165|2d07A|1e-24|35.8|151/215| RP:PFM:NREP 1 RP:PFM:REP 27->166|PF03167|3e-04|33.6|122/147|UDG| HM:PFM:NREP 1 HM:PFM:REP 23->172|PF03167|7e-28|26.9|134/150|UDG| RP:SCP:NREP 1 RP:SCP:REP 21->165|1mtlA|2e-26|47.5|139/157|c.18.1.2| HM:SCP:REP 20->185|1mugA_|1.2e-46|36.4|165/165|c.18.1.2|1/1|Uracil-DNA glycosylase-like| OP:NHOMO 248 OP:NHOMOORG 221 OP:PATTERN -------------------------------------------------------------------- -1--1-1-----------------------------1111-111--11-------11-----1-1-11111----1-----------------------------1-----------------------------------------------------------------------------121---------------------------------------------1----------------------------------------------------------------------------------------------------------1------------1---------------------1--1--------1-111---1--------------------------1-1------11---------------------------------------------------------------------------1111--------11------1---1------------------------------------------------------------------1-11------------------------------------------------------------------------11---111111111111-11111-111111111111111111---11111111111111111111--11------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------- ------1-------111111111111-1111111111111111111111112111111111-11-----------------------1--111-171--11-111-----2232112--1111-32-11181-11211--1-111111--1--1-1111111211111--1--11--------------1--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 163 STR:RPRED 88.6 SQ:SECSTR #######cGGGcccccccEEccccccTTccEEEEEccccHHHHHHTcccccccccHHHHHHHTTcccccccGGGGGGHHHHcEEEEEcccEEcccGGGccHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHccccEEEEEEcTTcccEEEccccTTccHcccH############## DISOP:02AL 1-6| PSIPRED cccccccccHHcccccccccccHHHccccEEEEEEccHHHHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHHccccEEHHHccccccccHHHHHHHHcccHHHHHHHHHHcccEEEEEcHHHHHHHHccccccccccccccccEEEEEEccccHHHHcccHHHHHHHHHHHHHHcc //