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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57686.1
DDBJ      :             putative amidase
Swiss-Prot:             

Homologs  Archaea  15/68 : Bacteria  281/915 : Eukaryota  16/199 : Viruses  0/175   --->[See Alignment]
c.117.1
:411 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   38->385 1ockA PDBj 2e-14 30.1 %
:RPS:PDB   7->386 2dqnA PDBj 2e-34 22.0 %
:RPS:SCOP  7->386 2df4A1  c.117.1.1 * 8e-35 21.7 %
:HMM:SCOP  1->406 1mt5A_ c.117.1.1 * 3.6e-87 36.5 %
:RPS:PFM   55->256 PF01425 * Amidase 4e-10 35.8 %
:HMM:PFM   54->395 PF01425 * Amidase 3.4e-70 34.6 341/435  
:BLT:SWISS 55->209 GATA_TREPS 7e-20 49.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57686.1 GT:GENE BAD57686.1 GT:PRODUCT putative amidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3024232..3025467) GB:FROM 3024232 GB:TO 3025467 GB:DIRECTION - GB:PRODUCT putative amidase GB:PROTEIN_ID BAD57686.1 LENGTH 411 SQ:AASEQ MTRYAPWSLRELVDDLAADRVGLEQVWQRSRRRIAETEQRLHAWVVRDPQTSPAGIPLGVKDIIDVAGYPTRCGSRVRADSAAATTDAEIVRRWRAAGFVPAGKTVTTEFAYFSPGPTGNPAAPGHTPGGSSSGSAAAVAAGQVPLALGSQTAGSVTRPAAYCGVAALVLTRGLLPTDGVTGLAPSLDSHGFFTAGVADLACAWSMLTGAPDPLDAPDAAPRVAVWDGGPPVEPSMRDAVAALRDRMVAEGADVVDFAHEVVAPAVEAHRMVMAYEAARERAAELARADELSRPLADLLRTGAAISDSEYTAARRAIERTRGAVSAVLGDYDVVLGPAAPGPAPHGLHATGDPVLSRPWQALGLPVVTVPGLRDPHGLPLGIQVIGAPHAEAALLRAAAWIHDITDTRRSR GT:EXON 1|1-411:0| BL:SWS:NREP 1 BL:SWS:REP 55->209|GATA_TREPS|7e-20|49.4|154/506| SEG 121->149|paapghtpggsssgsaaavaagqvplalg| SEG 210->221|apdpldapdaap| SEG 258->269|ahevvapaveah| SEG 274->288|ayeaareraaelara| SEG 335->351|lgpaapgpaphglhatg| SEG 387->399|aphaeaallraaa| BL:PDB:NREP 1 BL:PDB:REP 38->385|1ockA|2e-14|30.1|346/412| RP:PDB:NREP 1 RP:PDB:REP 7->386|2dqnA|2e-34|22.0|378/485| RP:PFM:NREP 1 RP:PFM:REP 55->256|PF01425|4e-10|35.8|201/425|Amidase| HM:PFM:NREP 1 HM:PFM:REP 54->395|PF01425|3.4e-70|34.6|341/435|Amidase| GO:PFM:NREP 1 GO:PFM GO:0016884|"GO:carbon-nitrogen ligase activity, with glutamine as amido-N-donor"|PF01425|IPR000120| RP:SCP:NREP 1 RP:SCP:REP 7->386|2df4A1|8e-35|21.7|378/485|c.117.1.1| HM:SCP:REP 1->406|1mt5A_|3.6e-87|36.5|405/537|c.117.1.1|1/1|Amidase signature (AS) enzymes| OP:NHOMO 415 OP:NHOMOORG 312 OP:PATTERN -------1-------1--1-111--11-1-------------------1-1111------------1- 12421-1----11111122-21111522222122223441111211-1-11131-1----11112231111--------111111--1--------------------1-11111111-11111--1---------111-----13211---111---1-2111-1111111111---1111-211--11-1------------------------------111-------1-----------------------------------------------------------------------------------------------------------------1----11--------11-11----1--1-1111--------433--12--211111111--11-222212242---2-----1---3171---1--11----1222222221--1---------------------------------1--1--25444----1--1111---1111-11--1--21-2---12---1-3-1-2111111---------11111----1--1------11-----11111111--111---1---------------1111122---1-1---------------------------12-1--------11---------------------------------111----------------------------------------------------11111-112---------------111111-------------------1--1---------1----------------11-1--------------------------11--------------------------111--1-11111- ----------------1-1-------1---------------------11-121--------------------------------------1-----------------------------------------------------------------------------------11--------11111-------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 380 STR:RPRED 92.5 SQ:SECSTR ######ccHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHccEEEEcHHHHccccEEEEETTcccTTccccTTcGGGTTccccccccHHHHHHHHTTcEEEEEEcccGGGcccccccccTTcTTcccccccHHHHHHHHTTcccEEEEEccccTTHHHHHHHTcEEEEccTTccccTTcccccTTTccEEEEEccHHHHHHHHHHHccccTTTTcccTTcEEEEEGGcTTccHHHHHHHHHHHHHHHHTTcEEEEEccGGGGGHHHHHHHHHHHHHHHHTTTcccccccccccccccHHHcTTTHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEccccccccTTTcTTcHTTTHHHHHHTccEEEEEEEEEETTEEEEEEEEc######################### DISOP:02AL 408-411| PSIPRED cccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcEEEEEcccccccccccHHHHHHHccccccccccHHHHccccccccHHHHHHHHHcccEEEEEccHHHHHccccccccccccccccccccccHHHHHHHHccccEEEcccccccHHccHHHcccEEEccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccHHHccccHHHHHHHHHcccEEEEEccccccccEEEEEEEcccccHHHHHHHHHHHHHHHcccccc //