[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57690.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  114/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:386 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   35->381 2rfqC PDBj 3e-23 27.5 %
:RPS:PDB   41->354 3b96A PDBj 4e-16 13.0 %
:RPS:SCOP  39->207 1bucA2  e.6.1.1 * 1e-11 22.5 %
:HMM:SCOP  1->211 2c12A2 e.6.1.1 * 6.6e-25 26.5 %
:HMM:SCOP  218->380 1jqiA1 a.29.3.1 * 4.5e-10 24.2 %
:RPS:PFM   260->365 PF08028 * Acyl-CoA_dh_2 3e-04 25.5 %
:HMM:PFM   234->363 PF08028 * Acyl-CoA_dh_2 4.1e-26 34.6 130/134  
:HMM:PFM   25->99 PF02771 * Acyl-CoA_dh_N 2.1e-08 26.7 75/113  
:BLT:SWISS 39->383 PIGM_RHOER 1e-29 31.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57690.1 GT:GENE BAD57690.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 3027979..3029139 GB:FROM 3027979 GB:TO 3029139 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD57690.1 LENGTH 386 SQ:AASEQ MIVSTPEATVPRTAGPAILDDVLAELAERRREFRDRKYVPRDFVARLKEAGIYRAATPRRFGGEPQAPADFLRTIERIATVDGSTGWVASFGSALVYLAALPLETQAELYADGPDVVFAGGLFPVQPAEEVDGAFRVTGRWKFASGCMAADVLGVGIPGDSSTGGKPRTALLRPDQVRIEQDWDVVGMRGTGSFDLVVADAVVPREWTFIRGGEPTVDEPLYRYPTIAYAAQVLAVVGAGVARAALDYAIETGAGRAGITGAPKLADRPYYRTAVAETEAALRSARAYFYEITDEVWQTVLRGDPASPAQNAHLRLAASHLATTAGAAVQRIVEISGTAAIFEDHPLQQWVGDALVPQQHAFLGPGLVDAAGAVLMGQPPTVPGFH GT:EXON 1|1-386:0| BL:SWS:NREP 1 BL:SWS:REP 39->383|PIGM_RHOER|1e-29|31.3|342/393| TM:NTM 2 TM:REGION 86->107| TM:REGION 224->246| SEG 23->32|laelaerrre| SEG 228->246|ayaaqvlavvgagvaraal| SEG 316->328|laashlattagaa| BL:PDB:NREP 1 BL:PDB:REP 35->381|2rfqC|3e-23|27.5|338/370| RP:PDB:NREP 1 RP:PDB:REP 41->354|3b96A|4e-16|13.0|301/554| RP:PFM:NREP 1 RP:PFM:REP 260->365|PF08028|3e-04|25.5|106/135|Acyl-CoA_dh_2| HM:PFM:NREP 2 HM:PFM:REP 234->363|PF08028|4.1e-26|34.6|130/134|Acyl-CoA_dh_2| HM:PFM:REP 25->99|PF02771|2.1e-08|26.7|75/113|Acyl-CoA_dh_N| RP:SCP:NREP 1 RP:SCP:REP 39->207|1bucA2|1e-11|22.5|169/232|e.6.1.1| HM:SCP:REP 1->211|2c12A2|6.6e-25|26.5|211/0|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 218->380|1jqiA1|4.5e-10|24.2|153/153|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 241 OP:NHOMOORG 114 OP:PATTERN -------------------------------------------------------------------- ----1-----1---34422-24--442222234777659A-12----------1---1--243-6-12231--------------------------------------------------------------------------1---1---------------------------------1-------1-----------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------1-------4-111----2-----------1--------1--1-1115---111---1-1----2-11---11111111---------------------------------------58--1----1-13122----222------13-1121-----1-------1-1----------------------1----------------------------14--------------------------------------1--------1------1-----------------------------------------------------1---------------------------------------------------------------2---------------11111-----2-----2-11--2----1----------1-------------1------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 352 STR:RPRED 91.2 SQ:SECSTR ##################################HHHHccHHHHHHHHHHTTTcTTccGGGTcccccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHTTcccccTTccccGGGcccEEEEcTTccEEEEEEEEEEEETTTTccEEEEEEcTTTccEEEEEEEEEEEGGEEEcccccccccTTccEEEEEEEEEEEEGGGEEccTTcHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEcEETTEEGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHccTTcHHHHHHHHGGHTTccccHHHHHHHHHHHHHcccTHHHHHH DISOP:02AL 382-386| PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccEEEEEccEEEEEEEEEEEEccccccEEEEEEEEcccccccEEEEEEEccccEEcccccccccccccccEEEEEEEEEcHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccc //