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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57692.1
DDBJ      :             putative ring-cleavage dioxygenase large subunit
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  269/915 : Eukaryota  53/199 : Viruses  0/175   --->[See Alignment]
b.33.1d.129.3
:429 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->427 1uljA PDBj 2e-41 29.1 %
:RPS:PDB   20->427 2ckfE PDBj 1e-58 23.9 %
:RPS:SCOP  17->155 1eg9A1  b.33.1.2 * 2e-40 34.5 %
:RPS:SCOP  158->427 1eg9A2  d.129.3.3 * 2e-47 25.7 %
:HMM:SCOP  5->158 1uliA1 b.33.1.2 * 3.1e-46 37.0 %
:HMM:SCOP  160->429 2b1xA2 d.129.3.3 * 1e-49 29.5 %
:RPS:PFM   47->125 PF00355 * Rieske 7e-08 39.0 %
:RPS:PFM   162->374 PF00848 * Ring_hydroxyl_A 5e-18 34.0 %
:HMM:PFM   162->428 PF00848 * Ring_hydroxyl_A 1e-28 26.0 250/271  
:HMM:PFM   43->126 PF00355 * Rieske 9.3e-26 41.5 82/97  
:BLT:SWISS 20->382 XYLX_PSEPU 4e-54 37.1 %
:PROS 142->149|PS00131|CARBOXYPEPT_SER_SER

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57692.1 GT:GENE BAD57692.1 GT:PRODUCT putative ring-cleavage dioxygenase large subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 3029593..3030882 GB:FROM 3029593 GB:TO 3030882 GB:DIRECTION + GB:PRODUCT putative ring-cleavage dioxygenase large subunit GB:PROTEIN_ID BAD57692.1 LENGTH 429 SQ:AASEQ MTAHSAAPHRAPADLVDGDRVAARIYTDPEIFELEMTKIFESTWIWVAHESEIARPGSFKSTYVGRQPVIVTRNRKGEINTLLNRCRHRGASICEQRSGVANGFTCPYHAWSYSLDGQLRGIPYPDGYEGVVSKGDLSLRKLRTESYGGMVFATFATDIEPLADHLGDAKLWINRFMKQGGGYPIKVLGTHRFTFHGNWKIQLENTTDGYHFPIVHRSWMASVDAETADMMSFMTDPEAVTHDLGHGHSVMQMVPEHSDLDADDGSEPLQARFDDLVAELKATGLDDAAVRKLVRAMHGTGFNLNLFPNVSMSAAFFRVLRPISVDETTIEHIAIGPDGPAEIVNPVNRARLRVHEHFQGPFGFGTPDDAEGWDRVQRGAQGDPDMPILVNRGLAREKPSPEGWPTAHVTDETGMRAAYAQWKQMMSDD GT:EXON 1|1-429:0| BL:SWS:NREP 1 BL:SWS:REP 20->382|XYLX_PSEPU|4e-54|37.1|345/454| PROS 142->149|PS00131|CARBOXYPEPT_SER_SER|PDOC00122| BL:PDB:NREP 1 BL:PDB:REP 13->427|1uljA|2e-41|29.1|395/425| RP:PDB:NREP 1 RP:PDB:REP 20->427|2ckfE|1e-58|23.9|381/433| RP:PFM:NREP 2 RP:PFM:REP 47->125|PF00355|7e-08|39.0|77/95|Rieske| RP:PFM:REP 162->374|PF00848|5e-18|34.0|200/209|Ring_hydroxyl_A| HM:PFM:NREP 2 HM:PFM:REP 162->428|PF00848|1e-28|26.0|250/271|Ring_hydroxyl_A| HM:PFM:REP 43->126|PF00355|9.3e-26|41.5|82/97|Rieske| GO:PFM:NREP 8 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00355|IPR017941| GO:PFM GO:0051537|"GO:2 iron, 2 sulfur cluster binding"|PF00355|IPR017941| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00355|IPR017941| GO:PFM GO:0005506|"GO:iron ion binding"|PF00848|IPR015879| GO:PFM GO:0016708|"GO:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor"|PF00848|IPR015879| GO:PFM GO:0019439|"GO:aromatic compound catabolic process"|PF00848|IPR015879| GO:PFM GO:0051537|"GO:2 iron, 2 sulfur cluster binding"|PF00848|IPR015879| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00848|IPR015879| RP:SCP:NREP 2 RP:SCP:REP 17->155|1eg9A1|2e-40|34.5|139/154|b.33.1.2| RP:SCP:REP 158->427|1eg9A2|2e-47|25.7|257/293|d.129.3.3| HM:SCP:REP 5->158|1uliA1|3.1e-46|37.0|154/154|b.33.1.2|1/1|ISP domain| HM:SCP:REP 160->429|2b1xA2|1e-49|29.5|251/0|d.129.3.3|1/1|Bet v1-like| OP:NHOMO 887 OP:NHOMOORG 329 OP:PATTERN -------111111-----------1------------------------------------------- -11-1--1112---1C911-1K--66111111FHJM1-FC-31G--------213-------2--131--------------1-----------------------------------------------------11111----2----11--1--1----1---3--1--------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------24111------11-2------1-11111111111-22122411-35-211122322322111-11251--1225111111112---1-----------------------1--------1-KQ1-3853554566654444665554552595H26521122321231252-6611-1212-1-------11-142-----------------------------1-----------------------------------1-1-------1------1--------------------------222-2---12-12222--2222-2222222223--12------------------2111112---1-111111111-----------11---24---------------5454422-1-2-44443432135421211--------------------------1-1--112------------11------------------------------------------------- ---------------212123316342212212----------111----24A6111------1-----1--1-1------11111-----11---------------4-6-----------------------------------------------1-------------------15---1211-1111------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 429 STR:RPRED 100.0 SQ:SECSTR cccccTTEETTTTGGcTTTEEEGGGGTcHHHHHHHHHHTTTTccEEEEEGGGcccTTEEEEEEETTEEEEEEEcTTccEEEEEcccTTTccccccccEEEcccEEcTTTccEEcTTccEEEcTTTTTTTTcccGGGccccEEEEEEETTEEEEEccTTcccHHHHHGGGHHHHHHHHTTTcccEEEEEEEEEEEEcccTHHHHHHHHccTTHHHHTHHHHTccEEEEcGGTTcccTTccEEEEETTcGGGGcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHTcEEEEEETTTEEEETcEEEEEEEccTTcEEEEEEEEEETTccHHHHHHHHHHHHHHHHHHcTTcTTGGGGHHHHHHHHHGGGcHHHHccEEEcTcEEcccccccEEEEcccccHHHHHHHHHHHHHHHcc DISOP:02AL 1-6, 428-429| PSIPRED ccccccccccccHHHcccccccccEEccHHHHHHHHHHHHHcccEEEEEHHHccccccEEEEEEccEEEEEEEccccEEEEEccccccccccHHccccccccEEEEcccccEEcccccEEEcccccccccccccccccccccEEEEEccEEEEEccccccccHHHcccHHHHHHHHHHcccccEEEEEEEEEEEEcccccEEHHHccccccccEEcHHHHHHcccccccccccccccccEEEEccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccEEEEEcccEEEcccEEEEEEEccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccEEcHHHHHHHHHHHHHHHccc //