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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57694.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  52/68 : Bacteria  875/915 : Eukaryota  193/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:246 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->245 3gk3B PDBj 7e-38 41.6 %
:RPS:PDB   5->246 2ae1A PDBj 3e-35 26.5 %
:RPS:SCOP  6->245 1pwxA  c.2.1.2 * 3e-39 23.5 %
:HMM:SCOP  1->242 1zemA1 c.2.1.2 * 6.3e-65 38.2 %
:RPS:PFM   5->169 PF00106 * adh_short 2e-14 39.0 %
:HMM:PFM   5->170 PF00106 * adh_short 4.4e-32 31.7 161/167  
:BLT:SWISS 5->244 PHBB_RHIME 2e-35 38.6 %
:PROS 139->167|PS00061|ADH_SHORT

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57694.1 GT:GENE BAD57694.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 3031384..3032124 GB:FROM 3031384 GB:TO 3032124 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57694.1 LENGTH 246 SQ:AASEQ MSAPVAVVTGGAHGLGEHIVRRLHAGGHRVAIADLDGPAATALAAELNDDLPVRGYQVDVADKVSLQRLLTAVTGDFGGVQVLVNNAARTQARPLLEITPEELDAVLAVGFRGTFLACQVFGAHMAEHGYGRIVNMASLAGQNGGTATGGHYASAKGAVLSLTKVFAREFAAAGVTVNAVSPGPQDSPVVRSIVGADNLDGFARTIPVGRLGDPAFIAEMVALLATPGAASVTGACWDANGGLYMR GT:EXON 1|1-246:0| BL:SWS:NREP 1 BL:SWS:REP 5->244|PHBB_RHIME|2e-35|38.6|236/241| PROS 139->167|PS00061|ADH_SHORT|PDOC00060| BL:PDB:NREP 1 BL:PDB:REP 5->245|3gk3B|7e-38|41.6|238/243| RP:PDB:NREP 1 RP:PDB:REP 5->246|2ae1A|3e-35|26.5|238/252| RP:PFM:NREP 1 RP:PFM:REP 5->169|PF00106|2e-14|39.0|164/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 5->170|PF00106|4.4e-32|31.7|161/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 6->245|1pwxA|3e-39|23.5|234/252|c.2.1.2| HM:SCP:REP 1->242|1zemA1|6.3e-65|38.2|241/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 14201 OP:NHOMOORG 1120 OP:PATTERN 221111368686766317133121944947581----------21143--522-12--1-22753144 EIW4k1-366E362g*oOO-Ow44k*ONOOOc****jz**5nC*PKCA4D92RIL84A11KIV5QKcbeWE111111111A9Y11333676625121--85O5AEn9VAE11111111111111355266732782CGGMH222GB9ACD4364533212644153DD9N3111112112112GB899561G8MFFGFGHHIEGHGIJGLGNNFLGFGBHHNLGC566665Ic9666665466666659AA9B71D2782611169558A686799656767576744444443454444566666676666634433244474358B5554444547746625756331198222A7123224333355513D1IdIIS11111LD*eh69BaLTROHIKHGGJHKJU-HMPHIoIPWrZ1*jjNhbh**zrrWdCNDNMVNGNQICL99999999PSQD7AD8111111111112223312211221211118Ht*N8HmcRc*qxw*wPTSTQkkxyWVVVBT*W*U*qd47PPKIBJGEVHaJqk7F94849B41121111236LG77O6B312211433324953E4483ADBBPT32221211111211311111112142255AA87ADD7JB46888A5CB877785988691-2344711-111BCFF7D7BDDABBBBCC-DBBDBABBCBDBCCBBCBBMQNE96799678889889878788SAB8997A31AAAAAAA9A9AA111324232A9AA2DKNI111627122221462FGILH7C7C9K8SROPIRRdMJIQMINKM4322243232345D5455479689KLGFKED99965551141998766--------1-3----1-----1--------------34421556663D3 111177E-212-6DBXkWUfSbLrjpdIKAFCEGIGALEICKLEGENPTbZi*yMVRJIJHH86D235462289933323767797-8-HgGkDXAAB78B7DHIF-AM8*GOGFE663523E5G82A4GfB-ABB4354H78HA48435D32C6DAFNbdS9TJDECCNCDPHH7BA5u232ACAWWsVbDC9MCDDD ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 246 STR:RPRED 100.0 SQ:SECSTR ccTTEEEEETcccHHHHHHHHHHHTTTcEEEEEEccHHHHHHHHHHHHHTTcEEEEEccTTcHHHHHHHHHHHHHHTTTccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHTTccEEEEEEccGGGTccccTTcHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEcccccccHHHcccHHHHHHHHHTccccccccHHHHHHHHHHHHcGGGTTccccEEEEcTTGGGc DISOP:02AL 246-247| PSIPRED ccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHccccccEEEEccccccc //