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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57703.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  551/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.124.1
:255 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   5->55 1bibA PDBj 9e-12 15.7 %
:RPS:PDB   42->253 3dlxB PDBj 7e-33 13.1 %
:RPS:SCOP  3->57 1lvaA4  a.4.5.35 * 1e-12 21.8 %
:RPS:SCOP  75->242 1ks2A1  c.124.1.4 * 2e-23 19.4 %
:HMM:SCOP  2->81 1stzA1 a.4.5.51 * 2.1e-14 38.8 %
:HMM:SCOP  74->238 1lk5A1 c.124.1.4 * 2.4e-31 29.9 %
:RPS:PFM   6->57 PF08220 * HTH_DeoR 6e-11 55.8 %
:RPS:PFM   79->234 PF00455 * DeoR 1e-26 45.2 %
:HMM:PFM   77->234 PF00455 * DeoR 8e-42 35.0 157/157  
:HMM:PFM   6->57 PF08220 * HTH_DeoR 5.5e-19 48.1 52/57  
:BLT:SWISS 18->253 AGAR_ECOLI 4e-38 35.7 %
:PROS 6->40|PS00894|HTH_DEOR_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57703.1 GT:GENE BAD57703.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3040278..3041045) GB:FROM 3040278 GB:TO 3041045 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57703.1 LENGTH 255 SQ:AASEQ MYAEERQQAIATLVGQRGRVSVADLAERYGVTSETVRRDLAVLDRMGLVRRVHGGAVPAAALTAIELGTTEREATHTAEKERIAKAALDYLPPTGGSVLFDAGTTTARVAALLPADRELVGVTNSLPVATRLSGHAGVQLHLLGGRVRGITQAAVGPDTLRVLAGLRVDTAFIGTNALTGAHGLSTPDVDEAAVKRAMVASAHRVVVVADSSKIGREDFVRFAGIDDIDVLVTDSGIPDSVRNELTDSGIEVVAA GT:EXON 1|1-255:0| BL:SWS:NREP 1 BL:SWS:REP 18->253|AGAR_ECOLI|4e-38|35.7|235/269| PROS 6->40|PS00894|HTH_DEOR_1|PDOC00696| RP:PDB:NREP 2 RP:PDB:REP 5->55|1bibA|9e-12|15.7|51/294| RP:PDB:REP 42->253|3dlxB|7e-33|13.1|206/465| RP:PFM:NREP 2 RP:PFM:REP 6->57|PF08220|6e-11|55.8|52/56|HTH_DeoR| RP:PFM:REP 79->234|PF00455|1e-26|45.2|155/157|DeoR| HM:PFM:NREP 2 HM:PFM:REP 77->234|PF00455|8e-42|35.0|157/157|DeoR| HM:PFM:REP 6->57|PF08220|5.5e-19|48.1|52/57|HTH_DeoR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF08220|IPR001034| GO:PFM GO:0005622|"GO:intracellular"|PF08220|IPR001034| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08220|IPR001034| RP:SCP:NREP 2 RP:SCP:REP 3->57|1lvaA4|1e-12|21.8|55/60|a.4.5.35| RP:SCP:REP 75->242|1ks2A1|2e-23|19.4|144/146|c.124.1.4| HM:SCP:REP 2->81|1stzA1|2.1e-14|38.8|80/87|a.4.5.51|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 74->238|1lk5A1|2.4e-31|29.9|144/150|c.124.1.4|1/1|NagB/RpiA/CoA transferase-like| OP:NHOMO 2098 OP:NHOMOORG 557 OP:PATTERN ------------------------2--1---------------------------------------- 33--9323445111-------3---5------322212231--2822-13336461-4--223575A667311111112---1--------1--------13--14-6-B--------------------------22211----------------------------1-------------32---11-31433333334243333375442434411123236666666A2222222222222224322342-1591-22155--881411--3433343333444444444444444444444444444533221333551177221233262513--244222-2-2121----1--1--42226222--12--------1-113---1311144444444446-111112221B--C665565BA8662----3225245432111111114222---4-------------------------------1---111113445434333344783333135362232--1211-1111-1323-------411111111----1---2---12--1---1-------11-----1-----------------------------5392-1111233111111122211111111-------------7588653A99BABABAA-9BAA9A9A9A9CA9AABA5ECE56432B8CBCBCBBABBABBBA877AA983-655555445555---------------136444737123225885----------3122122534222222455----------333744444532682211111----------3---------------------1---2-1------21-------4---13111-11 -------------2------------------------------------------------------------------------------------------------------------------------------------------------1----1------4---------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 255 STR:RPRED 100.0 SQ:SECSTR ccHHEEEEEcTTccEEEEEEETTTTEEEEEETTEEEEEcTTTTcccGGGccccGGGccEEEEcccccccccccccccHHHHHHHHHHGGGccTGTEEEEEcTTHHHHHHGGGccTTccEEEEETTTEEEEcccccGGccTTcccccEEEEEEEccHHHHHHHHHTTcccEEEEcccEEETTccEEccccTccTTHHHHTccTTcEEEEEGEEcEEccccccccccccccEEEcccEEEEEETEEETTTEEEEEEE DISOP:02AL 1-3| PSIPRED ccHHHHHHHHHHHHHHcccEEHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEcEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHccccEEEEEccHHHHHHHHcccccEEEEEccEEEccccEEEcHHHHHHHHHccccEEEEEEcEEccccccccccHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEccccccEEEEcccccHHHHHHHHHcccEEEEc //