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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57711.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  47/68 : Bacteria  807/915 : Eukaryota  186/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:296 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   19->203 2cfcA PDBj 2e-23 33.9 %
:RPS:PDB   1->45 2bkaA PDBj 4e-04 24.4 %
:RPS:PDB   19->279 1a27A PDBj 7e-34 22.4 %
:RPS:SCOP  19->279 1a27A  c.2.1.2 * 4e-34 23.0 %
:HMM:SCOP  12->261 1zemA1 c.2.1.2 * 4.9e-60 32.8 %
:RPS:PFM   19->185 PF00106 * adh_short 2e-12 35.2 %
:HMM:PFM   18->186 PF00106 * adh_short 1.4e-31 27.2 162/167  
:BLT:SWISS 16->265 EPHD_MYCTU 4e-25 34.7 %
:PROS 155->183|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57711.1 GT:GENE BAD57711.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3047788..3048678) GB:FROM 3047788 GB:TO 3048678 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57711.1 LENGTH 296 SQ:AASEQ MSPLAALLGHDRRSHDAWAVVTGAGSGIGRAFALEVAARGGRVVCADIDKERAEQTVRLIEQRHGRRAHALFCDVARREDVQALADYAEEVFAGPPTLVVNNAGVGIGGKPVGDIGFDDWDWALGINLWGVVHGCEIFTPRLRAAGRGGIVNVASAAGFAAAPRMGVYNTAKAAVVSLSETMAAELAGSGVAVTVLCPTFVTTNVVADGRITGGSSRLAETAMRLTGVSPERVAAETLDALDRGRLYVLPQLDARLIWLLKRTLPTPYATVLGLLNRLLPQENPSRPVTSTETTGA GT:EXON 1|1-296:0| BL:SWS:NREP 1 BL:SWS:REP 16->265|EPHD_MYCTU|4e-25|34.7|245/592| PROS 155->183|PS00061|ADH_SHORT|PDOC00060| SEG 154->162|asaagfaaa| BL:PDB:NREP 1 BL:PDB:REP 19->203|2cfcA|2e-23|33.9|183/250| RP:PDB:NREP 2 RP:PDB:REP 1->45|2bkaA|4e-04|24.4|41/231| RP:PDB:REP 19->279|1a27A|7e-34|22.4|259/285| RP:PFM:NREP 1 RP:PFM:REP 19->185|PF00106|2e-12|35.2|165/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 18->186|PF00106|1.4e-31|27.2|162/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 19->279|1a27A|4e-34|23.0|256/285|c.2.1.2| HM:SCP:REP 12->261|1zemA1|4.9e-60|32.8|244/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 9034 OP:NHOMOORG 1040 OP:PATTERN 221-1224333332521423111173382337-1----------1-43--522-11--1-1-523-33 BCI2N214448641YocJJ-JY33YwJIJJJQYklkQg**3Q4nGB872841I7B616--8AK2C7GKLE711111111154N1-11134541411---52D248X6K7D1111111-------353249451732C99EC222E5CBFF65454--12-4532536GDP7112121212221F865544-D5B999998ABCAA9AB9F7FF9D99A9ABFGD6765664DQ54444433334443388858518-56-5---5744454321444353232444121111111111112422444544444-22---222541539222322322453661453321-1471-163111115332235323529SBBI11-11F6eSP233JEGHCAAB998BABBK-DFIDCQFKOWO-aIIEOKWYVZXRHM9DBEAIF6CD9A933333333ACB843A5111-111111--1111-11--1--11-114CZYA5CIFAOaVYahYBHIHFRRWRKKKK7GkMgLlTL27JIJB59BBKCNESL5B71625511111111229HA35H5D21122-222226783733623856IM13-1111---1---2-------1-1-1225447AB4595215446-6574433343424--13234-1----8BAH5D57664766677-6678656777656777776CIB975276535565555545456F56554362-654555555555--141211166662EDDA111514111112453HHHKI6E5A9E4LLFJ9DHNJFFLHFDCD322122222144474344335367AC89A994443-1----2994477--------1-3--------2----------------33221343532A2 1---459-1-2-37DHHB9GEJDHEJJ4546456736C9B7AB544B6JKHRUT77EB9789338234261143711--1177766-4-CSAH4M82535435785-BD4uMZHIR86594CH6UJ3I6MnF-IDL5A77L78LE37755L13FAGBQNJJF6ONO7GJGeBJNJ3652L-125CAORh9cF67F9CA6 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 284 STR:RPRED 95.9 SQ:SECSTR ccTTTcHHHHHcccTTcEEEEcccccHHHHHHHHHHHTcTTccEEEEEEEccGGGTHHHHHHHHHTTcTcEEEEEccTTcHHHHHHHHHTcTTccccEEEEccccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTcEEEEEEEEGGGTcccTTcHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEccccccTTTTHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccEEEcccTTHHHHHTTTccTTcHHHHHHHHHHHHTcccc############ DISOP:02AL 1-15, 279-296| PSIPRED cccccccccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc //