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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57713.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  54/68 : Bacteria  868/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:250 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   74->250 2ztlA PDBj 9e-44 46.3 %
:RPS:PDB   8->248 1a27A PDBj 1e-32 18.7 %
:RPS:SCOP  10->248 1pwxA  c.2.1.2 * 2e-36 20.4 %
:HMM:SCOP  4->246 1zemA1 c.2.1.2 * 2.2e-74 39.9 %
:RPS:PFM   9->164 PF00106 * adh_short 1e-12 35.9 %
:HMM:PFM   10->163 PF00106 * adh_short 8.7e-31 36.0 150/167  
:BLT:SWISS 9->250 BDHA_RHIME 7e-46 41.3 %
:PROS 132->160|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57713.1 GT:GENE BAD57713.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3050714..3051466) GB:FROM 3050714 GB:TO 3051466 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57713.1 LENGTH 250 SQ:AASEQ MSGIDLTGRTALVTGAAGGIGAACARELARRGAAVTVADVDGPGAKAVADEIGGTAWEVDLLDVAALEDLRLEVDILVNNAGVQTVSPITEFPPQRFRTMLALMVEAPFLLIRAALPHMYAQRYGRIINISSVHGIRASAYKSAYVTAKHALEGLSKVTALEGGPHGVTSNCVNPGYVRTPLVDKQIAEQAAAHGIPEQDVVEQVLLTESAVKRLVEPAEVASLVAWLTGDAAGMVTGASYTMDGGWSAR GT:EXON 1|1-250:0| BL:SWS:NREP 1 BL:SWS:REP 9->250|BDHA_RHIME|7e-46|41.3|242/258| PROS 132->160|PS00061|ADH_SHORT|PDOC00060| SEG 15->25|gaaggigaaca| SEG 58->73|evdlldvaaledlrle| BL:PDB:NREP 1 BL:PDB:REP 74->250|2ztlA|9e-44|46.3|177/260| RP:PDB:NREP 1 RP:PDB:REP 8->248|1a27A|1e-32|18.7|241/285| RP:PFM:NREP 1 RP:PFM:REP 9->164|PF00106|1e-12|35.9|156/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 10->163|PF00106|8.7e-31|36.0|150/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 10->248|1pwxA|2e-36|20.4|235/252|c.2.1.2| HM:SCP:REP 4->246|1zemA1|2.2e-74|39.9|243/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 11388 OP:NHOMOORG 1112 OP:PATTERN 111122444464423316-32111A447366911---------21142--421-13111111533-21 BEN3e1-422715-SweHH-Hk33U*HGHHHNmx*yYt**4c6*MKA42B92KFH63811FGR1DBTYaPC11111121254S11211665415111--35J38Bf8O7F1111111--11111143244223243FFFGH222EBC6D92144433121433142995N3-1111112-11-EA777551E7HDDDDDDDEBDFDDEDIBII8GDDC9FGGHC8544444DY7444443344444438884781D17815-1-8A4466676789565545554532133333333333566665666666624422244464354A444333333454551243523118722265123224233335412D1DiDDJ11211J7zTW469SKORJIJIIHHHGIIP-FHNGEeENSjR1nYYOgWd*vqjgSWAG9IKUNDNRGAI66666666OOLB58C7111111111112233323311231211117An*G5GcUNWthksuoPPOPMddorRPQQBR*U*MxgZ46KKMGAHECMEPCch6A7496A951111111233HB76F49311111422313562C32838BA8FO3212111111111111111111211126689857A85G7347436599766444445441-2234711-1119DEB6E7AAA8A888AA-A9AB98899AA8A99AA98LNLC95798567878778667677P787665931699999989999111523121877836BDD111516111111242BBDCB7A478K5MNJLEJKYGGGLDELHK2332222233334B4444437567CEGCHBB77775652231665444--------1-2----1-----1------1-------2231163676292 11--FFB-1-1-257OUIKNLTHZSYRCD8ECCFFC9IDGAFI998KHMSMWmfKMI9DFED313233331134211111133353-6-DPGUAO88885437A99-CF5*JHDBHE5153483DC2F3IlA-B7G3332A58I319343D4183B8CIRQH9LIDFA9C75AFG5673g2227H7QNlFU9A6J8B7C ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 250 STR:RPRED 100.0 SQ:SECSTR ccTTccTcEEEEEcccccHHHHHHHHHHHTcTTccEEEEEEEccGGGTHHHHHHHHHTTccTTcEEEEEccTTccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTcEEEEEEEEGGGTcccTTcHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEccccccTTTTccccHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccTTHHHHHTTTccTTcHHGc DISOP:02AL 1-4| PSIPRED cccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHcccEEEEEcccHHHHHHHHccccEEEEcccccccccHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHcccccEEEEEccccccc //