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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57715.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  350/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.4.5b.45.2c.94.1
:305 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->197 3hhgG PDBj 4e-15 25.4 %
:RPS:PDB   9->193 1bi1A PDBj 5e-13 8.3 %
:RPS:SCOP  11->63 2esnA1  a.4.5.37 * 5e-10 24.5 %
:RPS:SCOP  93->190 1ylnA2  b.45.2.2 * 7e-13 12.4 %
:HMM:SCOP  6->116 1b9mA1 a.4.5.8 * 1.7e-19 33.3 %
:HMM:SCOP  91->291 1uthA_ c.94.1.1 * 3.3e-31 28.0 %
:RPS:PFM   11->64 PF00126 * HTH_1 6e-05 44.4 %
:RPS:PFM   95->241 PF03466 * LysR_substrate 1e-06 31.7 %
:HMM:PFM   92->290 PF03466 * LysR_substrate 1.9e-30 29.6 196/209  
:HMM:PFM   9->67 PF00126 * HTH_1 7.7e-17 42.4 59/60  
:BLT:SWISS 9->259 YAFC_ECOLI 6e-13 21.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57715.1 GT:GENE BAD57715.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 3052979..3053896 GB:FROM 3052979 GB:TO 3053896 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57715.1 LENGTH 305 SQ:AASEQ MPAAYPSPDDLLVLLAVARTGRFTYAGDELGLNHTTVSRRITALEDALGGRVLSRGAGGWELTDLGREALGAAEAIEAAVRSIAPNSRGERTLEGVVRMSATDGFSAYLAAPAVAEVRHRHPRIEVEIIATTRRASEQRSGLDLEVVVGEPRVRRARATPLGDYVIGLYGTPAYFAEHGTPESVADLAGHPLVYFIESMLQVDDLDLAPNVVPAMRESVSSTNVFVHVEATRAGAGLGLLPCFMADRHPDLVRVLPDAVAIRLTYWLVARPETLRRPEVAVLVDALRARVRAERRALLGASAAVN GT:EXON 1|1-305:0| BL:SWS:NREP 1 BL:SWS:REP 9->259|YAFC_ECOLI|6e-13|21.9|251/304| SEG 65->84|lgrealgaaeaieaavrsia| SEG 279->298|vavlvdalrarvraerrall| BL:PDB:NREP 1 BL:PDB:REP 9->197|3hhgG|4e-15|25.4|189/294| RP:PDB:NREP 1 RP:PDB:REP 9->193|1bi1A|5e-13|8.3|180/212| RP:PFM:NREP 2 RP:PFM:REP 11->64|PF00126|6e-05|44.4|54/60|HTH_1| RP:PFM:REP 95->241|PF03466|1e-06|31.7|145/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 92->290|PF03466|1.9e-30|29.6|196/209|LysR_substrate| HM:PFM:REP 9->67|PF00126|7.7e-17|42.4|59/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 11->63|2esnA1|5e-10|24.5|53/89|a.4.5.37| RP:SCP:REP 93->190|1ylnA2|7e-13|12.4|97/115|b.45.2.2| HM:SCP:REP 6->116|1b9mA1|1.7e-19|33.3|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 91->291|1uthA_|3.3e-31|28.0|200/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 1571 OP:NHOMOORG 354 OP:PATTERN -------------------------------------------------------------------- ---------------------1---3------11111134-----1------112-11----1-----1-----------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2--61131--1-C-7551153313233333333335-448439592C4-A7747A8GEB7BA655646653563464344444443422322-----------------------------1-553-1652BJLNPON75665AAEE888938QEB3757-1BA8-2622E433C--321213B11122212----541---------------------1-333545---------------------------1176-31-6-1226255312342225324313-------------54-7-714562422243-64444224446254444416A663122212122232222221293233333--111111111111---1---------1-8343332-2---1-----4444413233619949CCFF49ABD2759-1---11-1143372122122365672111------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------11--3---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 278 STR:RPRED 91.1 SQ:SECSTR ccHHHHHHHHHHHHHHTTccccHHHHHHHTTccHHHHHHHHHHHHHTTcEEEEEcTTccEEEcHHHHHHHHHHHHHHHHHHHHHTHHTTcccHHHHHHHHHHTTTccHHHHHHHHHHcccccccTTccEEccccHHHHTcccEEHHHHcccccEEEEEEEccGGGccccTTHHHHHHTccTTcEEEEcccccEEEcTTcTTHHHHHHHHHHTcccEEEEEEccHHHHHHHHHHTccEEEEEGGGccTcTTcEEEEccTTcccEEEEEEEETTccccHH########################### DISOP:02AL 1-3, 84-94, 296-305| PSIPRED cccccccHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHccHHHccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHHHHcccEEEEEEEcccEEcHHHccEEEEEEEccccccccEEEEEccccEEEEEcHHHHHcccccccHHHHccccEEEEccccccccHHHccccEEEEccccEEEccHHHHHHHHHHcccEEEHHHHHHHHcccEEEEccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccc //